PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA32G00876 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | ARF | ||||||||
Protein Properties | Length: 619aa MW: 68915.6 Da PI: 7.2246 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 48.2 | 2e-15 | 111 | 186 | 1 | 71 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHH CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvka 71 f k+lt+sd+++ g +++p+ +ae++ +++ + t++ +d +g++W++++iyr++++r++lt+GW+ F + AA32G00876 111 FAKTLTQSDANNGGGFSVPRYCAETIfprldytAEPPVQ--TVIAKDIHGETWKFRHIYRGTPRRHLLTTGWSTFMNT 186 89****************************987555555..8*********************************986 PP | |||||||
2 | Auxin_resp | 112 | 6e-37 | 198 | 280 | 2 | 83 |
Auxin_resp 2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 +a+++++FevvY+Prast+eF+vk+++v++a+++++s GmRfkmafetedss++++ +Gtv++v+ +dp+rWp+S+Wr+L+ AA32G00876 198 LARAASGQAFEVVYYPRASTPEFCVKASDVRSAMRMRWSGGMRFKMAFETEDSSRISWfMGTVSSVQFADPIRWPHSPWRLLQ 280 567899***************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.5E-25 | 103 | 186 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.4E-23 | 107 | 190 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.10E-12 | 110 | 183 | No hit | No description |
Pfam | PF02362 | 4.1E-13 | 111 | 187 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.0071 | 111 | 203 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 7.1E-32 | 199 | 280 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 17.816 | 496 | 579 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 619 aa Download sequence Send to blast |
MEVEKSLDPQ LWHACAGSMV QIPGLNSTVY YFPQGHIEHA HAPSDFHAPR VPPLLLCRVV 60 AVKFLADLES DEVYTKLTLL PIAGNDLDLE NDAVSGHATS DGNTNEKPAS FAKTLTQSDA 120 NNGGGFSVPR YCAETIFPRL DYTAEPPVQT VIAKDIHGET WKFRHIYRGT PRRHLLTTGW 180 STFMNTGRAK VEAVAEALAR AASGQAFEVV YYPRASTPEF CVKASDVRSA MRMRWSGGMR 240 FKMAFETEDS SRISWFMGTV SSVQFADPIR WPHSPWRLLQ VAWDEPDLLQ NVKRVSPWLV 300 EVVSNIPTIH LSPFSPRKKI RIPQPFDFPF DGTKFPIFSP TFTGINNNND SMCYLDNINN 360 NNNKNNAPAG IQGARQAQQL FGSPSLLSDL TINNSYSSNK LQSPSPGLFF SGFKHFTQPH 420 PKLQFTETEN NNISCSLTMG NSSPVQDKNS VPVKSSSFLL FGQPILTEQQ VLNRKRLMEE 480 TEEKKWNYNN LQGLETGHCK VFMESEDVGR TLDLTVIGSY QELNRKLTEM FSIEERTDLL 540 PHVVYRDGDG NTKRIGDELY SDFVRTTKRL TIKMNKGSGG GGSNGGGGSN GDNVRKTWIT 600 GLRNGENGID ATGPLSIFV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 3e-67 | 7 | 301 | 51 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA32G00876 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010521760.1 | 0.0 | PREDICTED: LOW QUALITY PROTEIN: auxin response factor 10 | ||||
Swissprot | Q9SKN5 | 0.0 | ARFJ_ARATH; Auxin response factor 10 | ||||
TrEMBL | A0A078FS55 | 0.0 | A0A078FS55_BRANA; Auxin response factor | ||||
STRING | A0A087GR04 | 0.0 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM580 | 27 | 130 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28350.1 | 0.0 | auxin response factor 10 |