PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA32G00790 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | GRAS | ||||||||
Protein Properties | Length: 1451aa MW: 163978 Da PI: 5.6515 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 359.5 | 4.9e-110 | 376 | 749 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 l++lL++cA+avs +d a++l+ +++ ++sp g+ +Rla+yf++ L+arl+++++++y al++++ts +++ l+a+++f v+P+ k++ + aN AA32G00790 376 LRTLLVSCAQAVSVDDRITAHELIRQVRLQSSPLGNGAERLAHYFANSLEARLSGTGTQIYTALSSKRTS---TADMLKAYHTFISVCPFKKIAIIFAN 471 6789************************************************************999999...89************************ PP GRAS 100 qaIle..avegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194 + ++ +++++++HiiDf+is+G+QWpaL++ La Rp+gpp+lRiTg++ p+ g ++ + etgerLa+++++++vpfe+n+ +a+++e+++le+L AA32G00790 472 HSLMHlaVAKNAKTIHIIDFGISYGFQWPALIHRLAWRPGGPPKLRITGIDLPQRGfrPAQGVIETGERLARYCQRFNVPFEYNA-IAQKWETIKLEDL 569 **98721344559*****************************************99*****************************.7************ PP GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgre 293 ++++gE +aVn+ ++l +llde+v+++ +rd+vLkl+++++P++++ + ++n++ F++rf e l ++s+lfd+ +++l+re++ r + E+e+ gre AA32G00790 570 KIREGEFIAVNSLFRLRNLLDETVAVNCPRDAVLKLIRKVNPDIFIPAILSGSYNAPFFVTRFRELLFHFSSLFDMCDTNLSREDDMRLMFEKEFYGRE 668 *************************************************************************************************** PP GRAS 294 ivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373 i+nvvaceg+er+er e++++W++r ++aGF+p+pl+ k +++ k+ ++ + s+ + ++ + ++l++gW++r +++ +aW AA32G00790 669 IMNVVACEGSERVERPESYKQWQARAMRAGFRPLPLDLKLVQKLKMTVESGYnSKDFDIDRDGNWLLQGWRGRIVYASCAW 749 ************************************************99888999************************* PP | |||||||
2 | GRAS | 360.7 | 2.1e-110 | 1074 | 1448 | 4 | 373 |
GRAS 4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPilkfshltaN 99 lL+ cA+ +s+gd++ a+ +L ++++++sp gd+ qRla+yf++AL+arl++ +++ + + ++ ++ +k+ +++l+a++++ sP++++ ++ AA32G00790 1074 LLTLCAQSISTGDKTTAHDVLLQIKQQSSPLGDASQRLAHYFANALEARLQGsTGPVIQNYYNALTSMKKTAADTLKAYQVYLSSSPFMTLMYFFSS 1170 7999************************************************4555566666888888888************************** PP GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194 +Il+a+ ++ +HiiDf+i +G+QWp ++q L++R++ p++lRiTg++ p+ g e++eetg+rLa+++++++vpfe+n++v++++e++++e+L AA32G00790 1171 GMILDAAGDASVLHIIDFGILYGFQWPMFIQHLSNRKGVPHKLRITGIDLPQRGfrPGEKIEETGRRLAEYCKRFNVPFEYNAIVSQNWETIRIEDL 1267 ****************************************************99*9***************************************** PP GRAS 195 rvkpgEalaVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErell 290 +++p+E+laVn ++l++llde++ ++ +rd++Lkl+++++P+v+v++ + + n++ F rf eal +ysalfd+++a+lpr++ er+ Ere+ AA32G00790 1268 KIQPNEVLAVNAGIRLKNLLDETGGEDNcPRDALLKLIRNINPDVFVHTILNGSFNAPFFISRFKEALFHYSALFDMFDATLPRDNPERVRFEREFY 1364 ************************999999******************************************************************* PP GRAS 291 greivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373 gre++nv+ace+++r+er et+++W+ r+ +aGFk+ p++ + +k+ k l++ + + v+e+s++l++gWk+r L++ S+W AA32G00790 1365 GRELMNVIACEESDRVERPETYRQWQVRMIRAGFKQKPVKAELVKSFKEKLKRWRyHKDFVVDENSKWLLQGWKGRILFASSCW 1448 ****************************************************9998999************************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 66.925 | 350 | 729 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.7E-107 | 376 | 749 | IPR005202 | Transcription factor GRAS |
PROSITE profile | PS50985 | 63.299 | 1045 | 1428 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 7.2E-108 | 1074 | 1448 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0042802 | Molecular Function | identical protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1451 aa Download sequence Send to blast |
MGSYSFRSEF PGSLEEIDFN NLSNFPVSNE ALGLGNGFYL DDQPLLDLAS LNIPSALPEP 60 YSQNSVPADS SSFSDDPDFS DSVLKYISQV LMEEDMAEKP CMFHDALSLQ AAEKSLYEAL 120 GEKYPYSPDQ QPHTSPGQWD YSPDVSFSSD YGNTSNITTS SDSHWSLDGL ENRPSWLQTP 180 IPNNFVFHSS SRSTPRGLNR DTGGGNNGVL SSGFSDDLVS SMFNDSDLAI QFRRGVEEAS 240 KFLPKSSQLL INPASGSKEK GSKEGEREHE SVPYRLTGKK SHWREDEHLA EERSNKQSAV 300 YVEENELSEM FDKVLLFGRP KEQPVCILHE TFPKDPTKFS SFKTQKGETT QPSETKNNGK 360 KLAASGNNSK QDTADLRTLL VSCAQAVSVD DRITAHELIR QVRLQSSPLG NGAERLAHYF 420 ANSLEARLSG TGTQIYTALS SKRTSTADML KAYHTFISVC PFKKIAIIFA NHSLMHLAVA 480 KNAKTIHIID FGISYGFQWP ALIHRLAWRP GGPPKLRITG IDLPQRGFRP AQGVIETGER 540 LARYCQRFNV PFEYNAIAQK WETIKLEDLK IREGEFIAVN SLFRLRNLLD ETVAVNCPRD 600 AVLKLIRKVN PDIFIPAILS GSYNAPFFVT RFRELLFHFS SLFDMCDTNL SREDDMRLMF 660 EKEFYGREIM NVVACEGSER VERPESYKQW QARAMRAGFR PLPLDLKLVQ KLKMTVESGY 720 NSKDFDIDRD GNWLLQGWRG RIVYASCAWG FNLMMERSYS GALGMFNAFE YYDVNVLPNP 780 DLYTDLEFGI LSSSDFDRNP NICADLPSAW EPIDDSTDAL LEYVSQILME ESIGDNQSMF 840 YDSLALQKTE EMLQQVITDS QTHSFSPDSV ITDEFSRTSS DSMAASVSIE SSSSSNTVLV 900 STPLSDSGFD STMDSFHNRQ IETPVNEALV KSMFSDTESA QQFKKGVEEA KKFLPNNNQW 960 LINLQPEKNK RPSEKFSVKE EKGLDGLSES SRVRKNHDWE VLDSEETRNS KQTAGNVEDG 1020 NITEMFDKVL LLDNECDPQT VINSKNGSSK TQAVQTKKGV GKKKKNQVVD FGALLTLCAQ 1080 SISTGDKTTA HDVLLQIKQQ SSPLGDASQR LAHYFANALE ARLQGSTGPV IQNYYNALTS 1140 MKKTAADTLK AYQVYLSSSP FMTLMYFFSS GMILDAAGDA SVLHIIDFGI LYGFQWPMFI 1200 QHLSNRKGVP HKLRITGIDL PQRGFRPGEK IEETGRRLAE YCKRFNVPFE YNAIVSQNWE 1260 TIRIEDLKIQ PNEVLAVNAG IRLKNLLDET GGEDNCPRDA LLKLIRNINP DVFVHTILNG 1320 SFNAPFFISR FKEALFHYSA LFDMFDATLP RDNPERVRFE REFYGRELMN VIACEESDRV 1380 ERPETYRQWQ VRMIRAGFKQ KPVKAELVKS FKEKLKRWRY HKDFVVDENS KWLLQGWKGR 1440 ILFASSCWVP A |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 5e-48 | 380 | 1448 | 8 | 374 | GRAS family transcription factor containing protein, expressed |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA32G00790 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC005315 | 3e-40 | AC005315.3 Arabidopsis thaliana chromosome 2 clone T9I4 map mi54, complete sequence. | |||
GenBank | CP002685 | 3e-40 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023639734.1 | 0.0 | scarecrow-like protein 33 isoform X4 | ||||
Swissprot | P0C883 | 0.0 | SCL33_ARATH; Scarecrow-like protein 33 | ||||
TrEMBL | D7LKB7 | 0.0 | D7LKB7_ARALL; Scarecrow transcription factor family protein | ||||
STRING | scaffold_401365.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM358 | 27 | 189 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G29060.1 | 0.0 | GRAS family protein |