PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA32G00648
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family WRKY
Protein Properties Length: 379aa    MW: 42999 Da    PI: 9.9108
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA32G00648genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY31.53.4e-10287307323
                 -SS-EEEEEEE--TT-SS-EE CS
        WRKY   3 DgynWrKYGqKevkgsefprs 23 
                 D y+WrKYGqK++kgs++pr 
  AA32G00648 287 DDYSWRKYGQKPIKGSPYPRY 307
                 99*****************95 PP
2WRKY543.3e-173303712060
                 S-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS
        WRKY  20 fprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60 
                 f r+YY+C+s  gCp++k+ver+ edp ++++tYegeHnh+k
  AA32G00648 330 FCRGYYKCSSMrGCPARKHVERCLEDPAMLIVTYEGEHNHPK 371
                 68******9988****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.5E-16238283IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.3E-30273371IPR003657WRKY domain
PROSITE profilePS5081124.076280372IPR003657WRKY domain
SuperFamilySSF1182909.29E-9283309IPR003657WRKY domain
SMARTSM007741.2E-32285371IPR003657WRKY domain
PfamPF031065.1E-7287309IPR003657WRKY domain
SuperFamilySSF1182907.32E-14330371IPR003657WRKY domain
PfamPF031063.1E-14330370IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MEEIEGSNRA AVESCHRVLN LLSRPQQQDH VYDRNLVSET KEAVFRFKRV GNLLSSSVGH  60
ARFRRSKNLK PHLSQSIFLD QQRTELPLKA PLARSTAFHE LSLRPADSSL TLGTKSFSLN  120
SNAKAPLLQL NHQAIPSSNF HKLFSEQQQQ QFHERLQAHH HHQQQQQQKL QAEIMLRKCN  180
GGISLSFDNS SCTPTMSSTR SFVSSLSIDG SVANIDGKNS FQLMGIPSST DHSSQHSKRK  240
CVMKGEDGSI KCGSSSRCHC SKKRKHRVRR SIKVPAISNK VADIPPDDYS WRKYGQKPIK  300
GSPYPRYCFC NVCYLFLILE AHDLEILFMF CRGYYKCSSM RGCPARKHVE RCLEDPAMLI  360
VTYEGEHNHP KMPSQTVTT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-152833741276WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00284DAPTransfer from AT2G30590Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA32G00648
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006410164.10.0probable WRKY transcription factor 21
SwissprotO043360.0WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBLV4M9740.0V4M974_EUTSA; Uncharacterized protein
STRINGXP_006410164.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35672861
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.11e-161WRKY DNA-binding protein 21