PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA32G00617

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

TCP

Protein Properties

Length: 333aa MW: 36716 Da PI: 7.521

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA32G00617	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	98.1	1.6e-30	29	153	1	89
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg........... 88 a+g+kdrhsk+ T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak ai++l ++++ e+++ ++ss+ ++sss+ AA32G00617 29 ATGRKDRHSKVFTSKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSAIDKLEISTTTVTAETTTLQESSKPGSSSSEanlhnqtqfet 127 589***********************************************************9995554433422222222221111112222223333 PP TCP 89 .........................k 89 + AA32G00617 128 tplmstffpvtsgitnsninfesynN 153 33555555555444444444554441 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	3.7E-28	30	175	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	32.429	32	90	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009965	Biological Process	leaf morphogenesis
GO:0030154	Biological Process	cell differentiation
GO:0045962	Biological Process	positive regulation of development, heterochronic

Sequence ? help Back to Top
Protein Sequence Length: 333 aa Download sequence Send to blast
MGLKSYNGGG DGAGVGEIVE VQGGHIIRAT GRKDRHSKVF TSKGPRDRRV RLSAHTAIQF 60 YDVQDRLGYD RPSKAVDWLI KKAKSAIDKL EISTTTVTAE TTTLQESSKP GSSSSEANLH 120 NQTQFETTPL MSTFFPVTSG ITNSNINFES YNNDLVSRTT SNLGQSQDNL GLSLHTFQGN 180 TTSSASDHHH HQATLFTTPF ETNSFGRFYN DLASSEQSRN GFLVNHQQPS MMTLLNSQQQ 240 PQQLFLGGQQ RGTLQSSFHS WDHHHNQHQH QHQHHHHNET VTDQNQASSV MFASQFGGHS 300 HGMIMQGLSF QSRIHGDGGQ ATPQPNSSSS PPN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	3e-22	37	90	1	54	Putative transcription factor PCF6
5zkt_B	3e-22	37	90	1	54	Putative transcription factor PCF6
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269\|PubMed:17307931, ECO:0000269\|PubMed:25378179}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA32G00617

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013732230.1	9e-95	transcription factor TCP10-like
Refseq	XP_013732231.1	9e-95	transcription factor TCP10-like
Refseq	XP_022568818.1	9e-95	transcription factor TCP10-like
Swissprot	O82277	1e-73	TCP10_ARATH; Transcription factor TCP10
TrEMBL	A0A1J3IRA7	8e-94	A0A1J3IRA7_NOCCA; Transcription factor TCP10
STRING	XP_006410230.1	6e-94	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14158	19	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31070.1	2e-63	TCP domain protein 10

Publications ? help Back to Top
Koyama T,Sato F,Ohme-Takagi M Roles of miR319 and TCP Transcription Factors in Leaf Development. Plant Physiol., 2017. 175(2): p. 874-885 [PMID:28842549] Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development. Plant Physiol., 2018. 176(2): p. 1694-1708 [PMID:29133375]