PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA32G00599 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | LBD | ||||||||
Protein Properties | Length: 201aa MW: 22410.3 Da PI: 6.4904 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 111.8 | 4.8e-35 | 7 | 107 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +C +Ck+lrrkCak+Cv+ pyf+ e+ +++fan+hk+ Gasn +kll++lp ++r a+ +++y+A+ r+rdP+yG+v++i++lqqq+ +l+ael+ l+ AA32G00599 7 PCGGCKFLRRKCAKGCVFTPYFCYEDaASHFANIHKVLGASNFSKLLSNLPLHDRFYAALTITYQAHSRLRDPIYGCVSHIFSLQQQVVSLQAELVFLR 105 7***********************9868*******************************************************************9988 PP DUF260 99 ee 100 ee AA32G00599 106 EE 107 76 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 21.157 | 6 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 6.4E-32 | 7 | 105 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
MGGLRSPCGG CKFLRRKCAK GCVFTPYFCY EDAASHFANI HKVLGASNFS KLLSNLPLHD 60 RFYAALTITY QAHSRLRDPI YGCVSHIFSL QQQVVSLQAE LVFLREEAST RFLQEDCTGP 120 NPGCDLMQQE KVLDQKVPQD SQSLFYQGCS GSDLAQISSA ADVPAVHGAA STFMAHSEPF 180 CSSNESFYYH EFMFPWSLSD Y |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-32 | 3 | 117 | 7 | 116 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-32 | 3 | 117 | 7 | 116 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA32G00599 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002879319.1 | 1e-80 | LOB domain-containing protein 14 | ||||
Swissprot | Q9SJW5 | 2e-80 | LBD14_ARATH; LOB domain-containing protein 14 | ||||
TrEMBL | D7LD16 | 3e-79 | D7LD16_ARALL; LOB domain protein 14 | ||||
STRING | Bostr.24513s0089.1.p | 3e-82 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM108 | 28 | 359 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31310.1 | 9e-83 | LOB domain-containing protein 14 |
Publications ? help Back to Top | |||
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