PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA32G00429 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | ERF | ||||||||
Protein Properties | Length: 135aa MW: 14851.1 Da PI: 7.7594 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 68.2 | 1.5e-21 | 13 | 63 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrd ++ g r++lg+f+taeeAa+a+++a+ +++g AA32G00429 13 KYRGVRRRP-WGKYAAEIRDSRNHG--ERVWLGTFDTAEEAARAYDQAAYSMRG 63 8********.**********65543..*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 2.1E-32 | 13 | 73 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.59E-27 | 13 | 72 | No hit | No description |
SMART | SM00380 | 9.8E-36 | 13 | 77 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 8.5E-16 | 13 | 63 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.881 | 13 | 71 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.05E-23 | 13 | 73 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 4.8E-12 | 14 | 25 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.8E-12 | 37 | 53 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009789 | Biological Process | positive regulation of abscisic acid-activated signaling pathway | ||||
GO:0010186 | Biological Process | positive regulation of cellular defense response | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0090332 | Biological Process | stomatal closure | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 135 aa Download sequence Send to blast |
MNQGGGNGGE QVKYRGVRRR PWGKYAAEIR DSRNHGERVW LGTFDTAEEA ARAYDQAAYS 60 MRGQAAILNF PHEYNNMGSG RSSSMAATTE AGSSSSSSSS SRQVFEFEYL DDSVLEELLD 120 HGEGSNKNKS SKNKK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 9e-55 | 1 | 129 | 1 | 129 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00029 | PBM | Transfer from AT5G43410 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA32G00429 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010481863.1 | 2e-55 | PREDICTED: ethylene-responsive transcription factor ERF096-like | ||||
Swissprot | Q9LSX0 | 1e-54 | ERF96_ARATH; Ethylene-responsive transcription factor ERF096 | ||||
TrEMBL | A0A087GPB6 | 9e-55 | A0A087GPB6_ARAAL; Uncharacterized protein | ||||
STRING | A0A087GPB6 | 2e-55 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43410.1 | 9e-42 | ERF family protein |
Publications ? help Back to Top | |||
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