PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA32G00371
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family HB-other
Protein Properties Length: 1744aa    MW: 197091 Da    PI: 5.1228
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA32G00371genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.16.3e-181975157
                TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
    Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                ++kR   t+ qle+Le+ ++ ++yps++ r++L+ kl+L++rq ++WF+ rR k++k
  AA32G00371 19 KSKRKMKTAAQLEVLEKTYAAEPYPSEAIRADLSVKLSLSDRQLQMWFCHRRLKDRK 75
                679****************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.2E-16475IPR009057Homeodomain-like
SuperFamilySSF466891.07E-141475IPR009057Homeodomain-like
PROSITE profilePS5007116.1961676IPR001356Homeobox domain
SMARTSM003895.3E-161880IPR001356Homeobox domain
CDDcd000866.81E-131976No hitNo description
PfamPF000461.7E-151975IPR001356Homeobox domain
SMARTSM005717.4E-24534593IPR018501DDT domain
PROSITE profilePS5082716.293534593IPR018501DDT domain
PfamPF027917.0E-17535590IPR018501DDT domain
PfamPF050663.2E-16726794IPR007759HB1/Asxl, restriction endonuclease HTH domain
PfamPF156124.4E-7913951IPR028942WHIM1 domain
PfamPF156131.2E-1210931165IPR028941WHIM2 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1744 aa     Download sequence    Send to blast
MEGGSEADKN KTPEGVENKS KRKMKTAAQL EVLEKTYAAE PYPSEAIRAD LSVKLSLSDR  60
QLQMWFCHRR LKDRKSTTPS KRQRKDSTPP VAESKPVTNA GELLTVSEAG NELESRKPPP  120
PPSQRPSVSA LPRTGGVTVV RRYNEPSPAE LRAIAYVESQ LGERLREDGP ILGMEFDPLP  180
PGAFGVPIEM PSHRKPSRQA FETNLYVKPV KDSVRTIREY QFLPELPSSR TDHSERVSPG  240
HHFGVPLDVS VTRVSSVVST GHPVSHRDES YDYNVSPRIP NLNLSAHQGK SGHGFLPNVA  300
EYDSTYQKNY DTPSRGKLSD HSIHEEPLVP SEREIVIEDE ALLLERKRKS EEARISREAE  360
AHEKRIRKEL EKQDLLRRKR EEQIRKEMER QDRERRKEEE RLLRERQREE ERYLKEQMRE  420
MLRREKFLKK ETIRAEKMRQ KEEQRREKEV ARLKAANERA IARKMAKESM ELIEDERLEL  480
MEVAASTKGL SSMLALDFET LQNLDLYREK QTIFPPTCVK LKKPFAIQPW NGSDEHVANL  540
LMVWRFLITF ADVLGLWPFT LDEFTQAFHD YDPRLMGEIH IVLLKTIIKD IEGVARTLSV  600
GVGANQNTTS NPGGGHPHVV EGAYAWGFDI RSWRRNLNVF TWPEILRQLA LSAGLGPQLK  660
KPNIKDASVH DNNEVGWYLS ASTHANNSEN VIFNLRVGVT AENAFAKMQE RGLSNPRRSR  720
HRLTPGTVKF AAFHVLSLEG EKGLTILEVA EKIQKSGLRD LTTSRTPEAS VAAALSRDTK  780
LFERVAPSTY CVRASYRKDA GDAEAIFAEA RERIRVFKSG ITDVEDVDDA ERDEDSESEI  840
GDDPEVDVLG TDLNLKKEIT ENVNSVEPVL ENGEVDSKVM KTEPELLPED IKDEKRDDIV  900
TDDNSCFDES KLGEQWIHGL VEGDYSNLSI EERLNALVAL IDIAIEGNTI RIALEERLEV  960
ASALKKQMWA EVQLDKRWKE ESVIRANYLS YPVTKPGVHL ATAVPGTQES PSAVIERSRE  1020
ATADPISSQE APQIDASYVN NVGIGSSLQL QENVSGMENL QYQQQGYTAD RERLRAQLKA  1080
YVGYKAEELY VYRSLPLGQD RRRNRYWRFS ASTSQSDPGC GRIFVELQDG RWRLIDSEEG  1140
FDNLVKSLDV RGVRESNLHF MLLKIETSFK EAVRRKPGMC SNLNTTSSSI SSAGLDSDAE  1200
EISTTFKIEL GENTSNLRGV LQRFQAFEKW MWENMLDLDA LSAFKYGAKK SSPLFCICGL  1260
CAELHFVEDV RCPGCGQMRG SELDDLCFSE QVAQLRENTR GVAEFILRGS VSSPLRIRLL  1320
KIQLALVEAS LPSEGLQPFW TQSLRKSWGL KLLSSKSPDE LHQVLTMLEI ALKRDFLSPD  1380
FETTSELLNL PEENEAIACN FTSELCRPVS VLPWIPKTTG GVALRLFEFD SAITYTPDQK  1440
TDLQKDKESE DFAGLETSFL RNVQDNDVAI ETPLQTPIQV GYTQEENWTE PGLGVSSSGR  1500
GRPRGRGRPR SRGNGRKSDK RVTTNPRSVA GRRAAVNTNG EGLEQPLRPR TQPRIPAAIR  1560
KHGRRSTRSR KRPTKGALSI SNEAPHHNET VSTKNALQDD DDWNETPELH DDGEEASSSG  1620
RSFPYNNYDD VQLPLVDEEY DNVMIPADNF DGGESSKLVG RGEFSLHSDD DDYEEDEDDD  1680
NGKGGEHDLN MDANVDDDDE DYINEDSDEK VIGNRYEMRM DSARKRFPYE DPDLTSSSSP  1740
GFSD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
115011511RPRGRGRPRSR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269|PubMed:22694359, ECO:0000269|PubMed:23872538}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA32G00371
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0052395e-89AB005239.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MLN1.
GenBankCP0026885e-89CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006279558.10.0homeobox-DDT domain protein RLT2
SwissprotQ9FFH10.0RLT2_ARATH; Homeobox-DDT domain protein RLT2
TrEMBLR0EUK20.0R0EUK2_9BRAS; Uncharacterized protein
STRINGBostr.3148s0041.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96012530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44180.10.0Homeodomain-like transcriptional regulator