PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA32G00371

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

HB-other

Protein Properties

Length: 1744aa MW: 197091 Da PI: 5.1228

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA32G00371	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.1	6.3e-18	19	75	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++kR t+ qle+Le+ ++ ++yps++ r++L+ kl+L++rq ++WF+ rR k++k AA32G00371 19 KSKRKMKTAAQLEVLEKTYAAEPYPSEAIRADLSVKLSLSDRQLQMWFCHRRLKDRK 75 679****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.2E-16	4	75	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.07E-14	14	75	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.196	16	76	IPR001356	Homeobox domain
SMART	SM00389	5.3E-16	18	80	IPR001356	Homeobox domain
CDD	cd00086	6.81E-13	19	76	No hit	No description
Pfam	PF00046	1.7E-15	19	75	IPR001356	Homeobox domain
SMART	SM00571	7.4E-24	534	593	IPR018501	DDT domain
PROSITE profile	PS50827	16.293	534	593	IPR018501	DDT domain
Pfam	PF02791	7.0E-17	535	590	IPR018501	DDT domain
Pfam	PF05066	3.2E-16	726	794	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	4.4E-7	913	951	IPR028942	WHIM1 domain
Pfam	PF15613	1.2E-12	1093	1165	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1744 aa Download sequence Send to blast
MEGGSEADKN KTPEGVENKS KRKMKTAAQL EVLEKTYAAE PYPSEAIRAD LSVKLSLSDR 60 QLQMWFCHRR LKDRKSTTPS KRQRKDSTPP VAESKPVTNA GELLTVSEAG NELESRKPPP 120 PPSQRPSVSA LPRTGGVTVV RRYNEPSPAE LRAIAYVESQ LGERLREDGP ILGMEFDPLP 180 PGAFGVPIEM PSHRKPSRQA FETNLYVKPV KDSVRTIREY QFLPELPSSR TDHSERVSPG 240 HHFGVPLDVS VTRVSSVVST GHPVSHRDES YDYNVSPRIP NLNLSAHQGK SGHGFLPNVA 300 EYDSTYQKNY DTPSRGKLSD HSIHEEPLVP SEREIVIEDE ALLLERKRKS EEARISREAE 360 AHEKRIRKEL EKQDLLRRKR EEQIRKEMER QDRERRKEEE RLLRERQREE ERYLKEQMRE 420 MLRREKFLKK ETIRAEKMRQ KEEQRREKEV ARLKAANERA IARKMAKESM ELIEDERLEL 480 MEVAASTKGL SSMLALDFET LQNLDLYREK QTIFPPTCVK LKKPFAIQPW NGSDEHVANL 540 LMVWRFLITF ADVLGLWPFT LDEFTQAFHD YDPRLMGEIH IVLLKTIIKD IEGVARTLSV 600 GVGANQNTTS NPGGGHPHVV EGAYAWGFDI RSWRRNLNVF TWPEILRQLA LSAGLGPQLK 660 KPNIKDASVH DNNEVGWYLS ASTHANNSEN VIFNLRVGVT AENAFAKMQE RGLSNPRRSR 720 HRLTPGTVKF AAFHVLSLEG EKGLTILEVA EKIQKSGLRD LTTSRTPEAS VAAALSRDTK 780 LFERVAPSTY CVRASYRKDA GDAEAIFAEA RERIRVFKSG ITDVEDVDDA ERDEDSESEI 840 GDDPEVDVLG TDLNLKKEIT ENVNSVEPVL ENGEVDSKVM KTEPELLPED IKDEKRDDIV 900 TDDNSCFDES KLGEQWIHGL VEGDYSNLSI EERLNALVAL IDIAIEGNTI RIALEERLEV 960 ASALKKQMWA EVQLDKRWKE ESVIRANYLS YPVTKPGVHL ATAVPGTQES PSAVIERSRE 1020 ATADPISSQE APQIDASYVN NVGIGSSLQL QENVSGMENL QYQQQGYTAD RERLRAQLKA 1080 YVGYKAEELY VYRSLPLGQD RRRNRYWRFS ASTSQSDPGC GRIFVELQDG RWRLIDSEEG 1140 FDNLVKSLDV RGVRESNLHF MLLKIETSFK EAVRRKPGMC SNLNTTSSSI SSAGLDSDAE 1200 EISTTFKIEL GENTSNLRGV LQRFQAFEKW MWENMLDLDA LSAFKYGAKK SSPLFCICGL 1260 CAELHFVEDV RCPGCGQMRG SELDDLCFSE QVAQLRENTR GVAEFILRGS VSSPLRIRLL 1320 KIQLALVEAS LPSEGLQPFW TQSLRKSWGL KLLSSKSPDE LHQVLTMLEI ALKRDFLSPD 1380 FETTSELLNL PEENEAIACN FTSELCRPVS VLPWIPKTTG GVALRLFEFD SAITYTPDQK 1440 TDLQKDKESE DFAGLETSFL RNVQDNDVAI ETPLQTPIQV GYTQEENWTE PGLGVSSSGR 1500 GRPRGRGRPR SRGNGRKSDK RVTTNPRSVA GRRAAVNTNG EGLEQPLRPR TQPRIPAAIR 1560 KHGRRSTRSR KRPTKGALSI SNEAPHHNET VSTKNALQDD DDWNETPELH DDGEEASSSG 1620 RSFPYNNYDD VQLPLVDEEY DNVMIPADNF DGGESSKLVG RGEFSLHSDD DDYEEDEDDD 1680 NGKGGEHDLN MDANVDDDDE DYINEDSDEK VIGNRYEMRM DSARKRFPYE DPDLTSSSSP 1740 GFSD

Sequence ? help Back to Top

Protein Sequence Length: 1744 aa Download sequence Send to blast

MEGGSEADKN KTPEGVENKS KRKMKTAAQL EVLEKTYAAE PYPSEAIRAD LSVKLSLSDR  60
QLQMWFCHRR LKDRKSTTPS KRQRKDSTPP VAESKPVTNA GELLTVSEAG NELESRKPPP  120
PPSQRPSVSA LPRTGGVTVV RRYNEPSPAE LRAIAYVESQ LGERLREDGP ILGMEFDPLP  180
PGAFGVPIEM PSHRKPSRQA FETNLYVKPV KDSVRTIREY QFLPELPSSR TDHSERVSPG  240
HHFGVPLDVS VTRVSSVVST GHPVSHRDES YDYNVSPRIP NLNLSAHQGK SGHGFLPNVA  300
EYDSTYQKNY DTPSRGKLSD HSIHEEPLVP SEREIVIEDE ALLLERKRKS EEARISREAE  360
AHEKRIRKEL EKQDLLRRKR EEQIRKEMER QDRERRKEEE RLLRERQREE ERYLKEQMRE  420
MLRREKFLKK ETIRAEKMRQ KEEQRREKEV ARLKAANERA IARKMAKESM ELIEDERLEL  480
MEVAASTKGL SSMLALDFET LQNLDLYREK QTIFPPTCVK LKKPFAIQPW NGSDEHVANL  540
LMVWRFLITF ADVLGLWPFT LDEFTQAFHD YDPRLMGEIH IVLLKTIIKD IEGVARTLSV  600
GVGANQNTTS NPGGGHPHVV EGAYAWGFDI RSWRRNLNVF TWPEILRQLA LSAGLGPQLK  660
KPNIKDASVH DNNEVGWYLS ASTHANNSEN VIFNLRVGVT AENAFAKMQE RGLSNPRRSR  720
HRLTPGTVKF AAFHVLSLEG EKGLTILEVA EKIQKSGLRD LTTSRTPEAS VAAALSRDTK  780
LFERVAPSTY CVRASYRKDA GDAEAIFAEA RERIRVFKSG ITDVEDVDDA ERDEDSESEI  840
GDDPEVDVLG TDLNLKKEIT ENVNSVEPVL ENGEVDSKVM KTEPELLPED IKDEKRDDIV  900
TDDNSCFDES KLGEQWIHGL VEGDYSNLSI EERLNALVAL IDIAIEGNTI RIALEERLEV  960
ASALKKQMWA EVQLDKRWKE ESVIRANYLS YPVTKPGVHL ATAVPGTQES PSAVIERSRE  1020
ATADPISSQE APQIDASYVN NVGIGSSLQL QENVSGMENL QYQQQGYTAD RERLRAQLKA  1080
YVGYKAEELY VYRSLPLGQD RRRNRYWRFS ASTSQSDPGC GRIFVELQDG RWRLIDSEEG  1140
FDNLVKSLDV RGVRESNLHF MLLKIETSFK EAVRRKPGMC SNLNTTSSSI SSAGLDSDAE  1200
EISTTFKIEL GENTSNLRGV LQRFQAFEKW MWENMLDLDA LSAFKYGAKK SSPLFCICGL  1260
CAELHFVEDV RCPGCGQMRG SELDDLCFSE QVAQLRENTR GVAEFILRGS VSSPLRIRLL  1320
KIQLALVEAS LPSEGLQPFW TQSLRKSWGL KLLSSKSPDE LHQVLTMLEI ALKRDFLSPD  1380
FETTSELLNL PEENEAIACN FTSELCRPVS VLPWIPKTTG GVALRLFEFD SAITYTPDQK  1440
TDLQKDKESE DFAGLETSFL RNVQDNDVAI ETPLQTPIQV GYTQEENWTE PGLGVSSSGR  1500
GRPRGRGRPR SRGNGRKSDK RVTTNPRSVA GRRAAVNTNG EGLEQPLRPR TQPRIPAAIR  1560
KHGRRSTRSR KRPTKGALSI SNEAPHHNET VSTKNALQDD DDWNETPELH DDGEEASSSG  1620
RSFPYNNYDD VQLPLVDEEY DNVMIPADNF DGGESSKLVG RGEFSLHSDD DDYEEDEDDD  1680
NGKGGEHDLN MDANVDDDDE DYINEDSDEK VIGNRYEMRM DSARKRFPYE DPDLTSSSSP  1740
GFSD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1501	1511	RPRGRGRPRSR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269\|PubMed:22694359, ECO:0000269\|PubMed:23872538}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA32G00371

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB005239	5e-89	AB005239.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MLN1.
GenBank	CP002688	5e-89	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006279558.1	0.0	homeobox-DDT domain protein RLT2
Swissprot	Q9FFH1	0.0	RLT2_ARATH; Homeobox-DDT domain protein RLT2
TrEMBL	R0EUK2	0.0	R0EUK2_9BRAS; Uncharacterized protein
STRING	Bostr.3148s0041.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9601	25	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.1	0.0	Homeodomain-like transcriptional regulator