PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA32G00340 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | HB-other | ||||||||
Protein Properties | Length: 468aa MW: 52272.7 Da PI: 8.3964 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 49 | 1e-15 | 2 | 45 | 14 | 57 |
HHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 14 eLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +Le+++++++yp++e++++LA+++gLte+qV+ WF+ rR k+k+ AA32G00340 2 ALENFYNEHKYPTEEMKAKLAEEIGLTEKQVSGWFCHRRLKDKR 45 79****************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.386 | 1 | 46 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.8E-8 | 1 | 50 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.54E-13 | 2 | 55 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 3.5E-13 | 2 | 45 | IPR001356 | Homeobox domain |
CDD | cd00086 | 8.78E-14 | 2 | 46 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.1E-16 | 2 | 45 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 468 aa Download sequence Send to blast |
MALENFYNEH KYPTEEMKAK LAEEIGLTEK QVSGWFCHRR LKDKRSVKED GNAIGSQDRS 60 SVVLHDRGSG HRQDSCGSTK QTDYWNPKPR EVESQRLYGG SYVGDVDGED STSSERSSSL 120 HKNLVSTKDG VCDVEKNSRY VARSNVIKHP QVTRSYGSNK PSGYLKVKGE TENVAITAVK 180 RQLGRQYRED GPPLGVDFDP LPPAAFEPQT NAIGQEPIYV GNQRRSHSPY VAGTRKSINP 240 GHSHEAYKSK IHSPDPYSED EDEDDEDNVM VGIEPGLRDK QSLGELRLKS PSLTFSNPVL 300 DRNSLKESFK SLPREIPLIN SKKSRISSKH RAEGFRHNPI PNFQDLSGSN LESNETPLHS 360 EYYTKSSKLV PLGSSQSPNT MERTPSSGMA GKYHGERSHM KMQREKLHST NEPLVTKQVK 420 HSYLQQGYAP RASYSELQGR KGQINRSGFE VPSSLSGDET AESSSSMD |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA32G00340 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002874873.2 | 0.0 | uncharacterized protein LOC9310940 | ||||
TrEMBL | A0A1J3D4B5 | 0.0 | A0A1J3D4B5_NOCCA; Homeobox protein BarH-like 1 | ||||
STRING | Bostr.2983s0116.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12202 | 25 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G03250.1 | 0.0 | HB-other family protein |