PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA32G00294
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family C2H2
Protein Properties Length: 297aa    MW: 33972.8 Da    PI: 10.1514
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA32G00294genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.17.4e-0685107123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C++C+k F r  nL+ H r H
  AA32G00294  85 FVCEICNKGFQRDQNLQLHRRGH 107
                 89*******************88 PP
2zf-C2H211.90.0007162184123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 +kC++C+k +  +s+ k H + +
  AA32G00294 162 WKCEKCSKLYAVQSDWKAHTKIC 184
                 58*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.608.6E-684107IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.59E-684107No hitNo description
SMARTSM003550.01785107IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.94985107IPR007087Zinc finger, C2H2
PfamPF121714.2E-585107IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS00028087107IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.7E-4150183IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.59E-6157182No hitNo description
SMARTSM00355220162182IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MDMFSPHSLM SYKLSSLSEE ASASSGNNTL CNTVEDFSGL SNVISTLCTD QLLKTKKRRG  60
LPGNPDPDAE VIALSPKTLL ATNRFVCEIC NKGFQRDQNL QLHRRGHNLP WKLKQRSNKE  120
EQKRKVYVCP ETSCVHHHPS RALGDLTGIK KHFCRKHGEK KWKCEKCSKL YAVQSDWKAH  180
TKICGTREYR CDCGTLFSRK DSFITHRAFC DALAEESARL FTNPNPNSLN DVVSLQNPSF  240
NHFENRHFLL NYKSSSSSSL LFTSPSPSAA TCFSRHLLLP PPHLRRRFPR RLFFKKR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-36158227372Zinc finger protein JACKDAW
5b3h_F2e-36158227372Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15258LKTKKRR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA32G00294
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013619493.11e-141PREDICTED: protein indeterminate-domain 12
RefseqXP_013674575.11e-141protein indeterminate-domain 12
SwissprotO227591e-136IDD12_ARATH; Protein indeterminate-domain 12
TrEMBLA0A0D3ASE21e-140A0A0D3ASE2_BRAOL; Uncharacterized protein
TrEMBLA0A3P6DPP51e-140A0A3P6DPP5_BRAOL; Uncharacterized protein
STRINGBo2g100660.11e-141(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02670.11e-131indeterminate(ID)-domain 12
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]