PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA32G00284

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

HB-other

Protein Properties

Length: 951aa MW: 106258 Da PI: 7.333

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA32G00284	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	22	2.8e-07	95	151	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +r+R +t++ ++ L+++F + ++++e +e++++ g+t +qV+ +F ++++ +k AA32G00284 95 KRPRDLLTPKAVKYLQAVFSIKDAITKKESREISAQFGITVAQVRDYFVTQKTRVRK 151 799*********************************************999999886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.59E-7	88	155	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.1E-6	89	142	IPR009057	Homeodomain-like
PROSITE profile	PS50071	11.175	92	152	IPR001356	Homeobox domain
SMART	SM00389	5.9E-5	94	156	IPR001356	Homeobox domain
CDD	cd00086	1.99E-4	95	152	No hit	No description
Pfam	PF00046	1.0E-4	95	151	IPR001356	Homeobox domain
SuperFamily	SSF47676	7.85E-5	271	364	IPR017923	Transcription factor IIS, N-terminal
Gene3D	G3DSA:1.20.930.10	0.001	271	361	IPR017923	Transcription factor IIS, N-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006351	Biological Process	transcription, DNA-templated
GO:0009911	Biological Process	positive regulation of flower development
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 951 aa Download sequence Send to blast
MDAFKEEIEI GSSVESLLEL LDSQKDLFHS QIDQLQDVVV TQCNLTGVNP LAQEMVGCPY 60 DIFLVSRAVC FFWVLASYMA QLVSLLDIAS EKERKRPRDL LTPKAVKYLQ AVFSIKDAIT 120 KKESREISAQ FGITVAQVRD YFVTQKTRVR KQVRLSREKA IIFSTPLLQH DGVLENNNAL 180 NPADPVPLNS GPIYTEALSL DPVPLASIVP TSGVDSFGIM SHDDIPPDIS DSDKYFAENI 240 FPLLHKEETF SGQVKLMEWI MQIQDSSVLI WFLLKGGVLI LTTWLSQAAI EEQTSVILLI 300 LKVLCHLPLY KASPENMSAI LQSVNGLRFY RTSDISNRAK GLLSRWTKLF AKIQAMKKQN 360 RNNSHIDAQS QLLLKQRQVP GLYVVIIYFI FPPFFFIADI MGESSNPQED FLSLSNGKSE 420 NIRRVEPSQG PKLLLTSADD STKKHMLDNK ERRKVQMVEQ PGQKPVGRGP QTVRIGTSNR 480 SRPMSADDIQ KAKMRALYMQ SKHGKKEPLP DASSDSKTIV PENPLALQSA KDSPPSQQNE 540 AKSECTDEPS AVQPVNSPAV NVVGQVDESE KPSIAAQHVS SKVGVLVKMS PQAILENCKR 600 NQIIWHAPPE MVLDDLWRVA AGGNSKEIDV QKNRNRRERE TIYHSLQIIP LNPKEPWDKE 660 MDFDDSLTPE IPSQQPPEES VTTQPEDSLD ERRTAAAAAS TSSSQGSNAL EPDLELLAAL 720 LKNPDLVFAL TSGQSGNFAG QDVVKLLDVI KTGGPNSSSS ANKKVEEKVE VSLPSPTPST 780 NPGMSGWGQE AIRNPFSRQV ARTSTTIAER QQQQQQQQQQ AMQPKLRQNQ HFQQHPISTT 840 SYAIREPVGH MGATGPPSVS WRSQQQSQNS YYTHQVNEMS SVRGGGAQAY QVNNNNQQYM 900 SNPGFESWSP DHSPNRNHPN IMRGQPQQPQ QPLRKPDSHQ HPYWSQNKRW R

Sequence ? help Back to Top

Protein Sequence Length: 951 aa Download sequence Send to blast

MDAFKEEIEI GSSVESLLEL LDSQKDLFHS QIDQLQDVVV TQCNLTGVNP LAQEMVGCPY  60
DIFLVSRAVC FFWVLASYMA QLVSLLDIAS EKERKRPRDL LTPKAVKYLQ AVFSIKDAIT  120
KKESREISAQ FGITVAQVRD YFVTQKTRVR KQVRLSREKA IIFSTPLLQH DGVLENNNAL  180
NPADPVPLNS GPIYTEALSL DPVPLASIVP TSGVDSFGIM SHDDIPPDIS DSDKYFAENI  240
FPLLHKEETF SGQVKLMEWI MQIQDSSVLI WFLLKGGVLI LTTWLSQAAI EEQTSVILLI  300
LKVLCHLPLY KASPENMSAI LQSVNGLRFY RTSDISNRAK GLLSRWTKLF AKIQAMKKQN  360
RNNSHIDAQS QLLLKQRQVP GLYVVIIYFI FPPFFFIADI MGESSNPQED FLSLSNGKSE  420
NIRRVEPSQG PKLLLTSADD STKKHMLDNK ERRKVQMVEQ PGQKPVGRGP QTVRIGTSNR  480
SRPMSADDIQ KAKMRALYMQ SKHGKKEPLP DASSDSKTIV PENPLALQSA KDSPPSQQNE  540
AKSECTDEPS AVQPVNSPAV NVVGQVDESE KPSIAAQHVS SKVGVLVKMS PQAILENCKR  600
NQIIWHAPPE MVLDDLWRVA AGGNSKEIDV QKNRNRRERE TIYHSLQIIP LNPKEPWDKE  660
MDFDDSLTPE IPSQQPPEES VTTQPEDSLD ERRTAAAAAS TSSSQGSNAL EPDLELLAAL  720
LKNPDLVFAL TSGQSGNFAG QDVVKLLDVI KTGGPNSSSS ANKKVEEKVE VSLPSPTPST  780
NPGMSGWGQE AIRNPFSRQV ARTSTTIAER QQQQQQQQQQ AMQPKLRQNQ HFQQHPISTT  840
SYAIREPVGH MGATGPPSVS WRSQQQSQNS YYTHQVNEMS SVRGGGAQAY QVNNNNQQYM  900
SNPGFESWSP DHSPNRNHPN IMRGQPQQPQ QPLRKPDSHQ HPYWSQNKRW R

Functional Description ? help Back to Top
Source	Description
UniProt	Seems to play a role in the regulation of flowering time in the autonomous flowering pathway by repressing FLOWERING LOCUS C expression. {ECO:0000269\|PubMed:10363371}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA32G00284

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	ATU03456	1e-159	U03456.1 Arabidopsis thaliana Wassilewskija Luminidependens mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010422575.1	0.0	PREDICTED: homeobox protein LUMINIDEPENDENS
Swissprot	Q38796	0.0	LUMI_ARATH; Homeobox protein LUMINIDEPENDENS
TrEMBL	V4KJ89	0.0	V4KJ89_EUTSA; Uncharacterized protein
STRING	Bostr.2983s0206.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10876	24	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02560.2	0.0	HB-other family protein

Publications ? help Back to Top
Chakrabortee S, et al. Luminidependens (LD) is an Arabidopsis protein with prion behavior. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(21): p. 6065-70 [PMID:27114519]