PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA32G00212
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family WRKY
Protein Properties Length: 487aa    MW: 53764.4 Da    PI: 7.1196
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA32G00212genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.73.6e-31239298159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                 ++Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed++++++tYeg+Hnh+
  AA32G00212 239 VNDGCQWRKYGQKMAKGNPCPRAYYRCTMAiGCPVRKQVQRCAEDTTILTTTYEGNHNHP 298
                 58*********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.8E-33224300IPR003657WRKY domain
SuperFamilySSF1182907.98E-28232300IPR003657WRKY domain
PROSITE profilePS5081128.862234300IPR003657WRKY domain
SMARTSM007743.5E-37239299IPR003657WRKY domain
PfamPF031061.5E-26240298IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MEEHTHQDRR EIAFLHSGEF RRGDSAVKDD DHQHHNHKTA PSSIKEVDFF AANCQPYDAA  60
HLTATIVGSS RLNDLVDSHP GTSRITTDDD DDDKSKFQMS RLKMEIGRLN EENQKLRNLL  120
EEITKSYNDL HNRVLFARHT QLQQDLYKQN QNDIPQAIEE KRAMNINNEI PVKEQTATLK  180
RRSPDGEVPG NSPKSPKLDQ YNNNNNKTSN NDEEQNTHQE LPFRKARVSV RARSDATTVN  240
DGCQWRKYGQ KMAKGNPCPR AYYRCTMAIG CPVRKQVQRC AEDTTILTTT YEGNHNHPLP  300
PSATAMAVTT SAAAAMLLSG STTSNFHQTL SNPIAATSSS YNHNFPNYTS TIATLSASAP  360
FPTITLDLTN PPPPRPLPPQ LLGQYNPAAF LPNAGNQIRS INNQLLGQLP PPSPRDGINY  420
NMVDSVKAAI AMDPNFTAAL AAAITNIIGG GNVNNNNSKS NDDHKVDGNS NGDSPQLPQS  480
CTTFSTT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-22226301175WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00115ampDAPTransfer from AT4G01720Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA32G00212
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020879345.10.0probable WRKY transcription factor 47
SwissprotQ9ZSI71e-179WRK47_ARATH; Probable WRKY transcription factor 47
TrEMBLD7M4960.0D7M496_ARALL; WRKY DNA-binding protein 47
STRINGBostr.4825s0004.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM71562743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01720.11e-161WRKY family protein