PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA32G00209 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | MYB | ||||||||
Protein Properties | Length: 334aa MW: 37537.9 Da PI: 8.0674 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.3 | 1.5e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEd++l+++++++G g+W+++++ g+ R++k+c++rw +yl AA32G00209 14 KGLWSPEEDDKLLRYITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYL 61 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 45.7 | 1.5e-14 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++++E+ l++++++ lG++ W+ Ia+ ++ gRt++++k+ w++ AA32G00209 67 RGAFSQDEENLIIELHAVLGNR-WSQIAAQLP-GRTDNEIKNLWNS 110 89********************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.4E-28 | 6 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.004 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.57E-29 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.6E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.1E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.19E-11 | 17 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.507 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-25 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.1E-13 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-13 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.23E-9 | 69 | 109 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 334 aa Download sequence Send to blast |
MGRHSCCYKQ KLRKGLWSPE EDDKLLRYIT KYGHGCWSSV PKQAGLQRCG KSCRLRWINY 60 LRPDLKRGAF SQDEENLIIE LHAVLGNRWS QIAAQLPGRT DNEIKNLWNS CLKKKLRMRG 120 IDPVTHKLLT EIETGTEDKT KPVEKPISAT INNNNRQSYL ETEGSSSTTT CSNHSIYTGN 180 FGFQRLSLET GSRIQTGSDL SVWFPQTGRN HHVETAIPSA VVIPGSMFGS GLTGYRSANL 240 GLIELENSFS TGPVITDQNY SNSTLYGNGN MNWGLTMDEQ ESQYMISNNN NNNNSLENHS 300 NSSLYSEIKS EINYSGMEAT NVGMWPQQHA YGHL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-28 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 111 | 117 | LKKKLRM |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that coordinates a small network of downstream target genes required for several aspects of plant growth and development, such as xylem formation and xylem cell differentiation, and lateral root formation (PubMed:22708996). Regulates a specific set of target genes by binding DNA to the AC cis-element 5'-ACCTAC-3' (PubMed:23741471). Functions as a transcriptional regulator of stomatal closure. Plays a role the regulation of stomatal pore size independently of abscisic acid (ABA) (PubMed:16005292). Required for seed coat mucilage deposition during the development of the seed coat epidermis (PubMed:19401413). Involved in the induction of trichome initiation and branching by positively regulating GL1 and GL2. Required for gibberellin (GA) biosynthesis and degradation by positively affecting the expression of the enzymes that convert GA9 into the bioactive GA4, as well as the enzymes involved in the degradation of GA4 (PubMed:28207974). {ECO:0000269|PubMed:16005292, ECO:0000269|PubMed:19401413, ECO:0000269|PubMed:22708996, ECO:0000269|PubMed:23741471, ECO:0000269|PubMed:28207974}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00427 | DAP | Transfer from AT4G01680 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA32G00209 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF176000 | 1e-156 | AF176000.2 Arabidopsis thaliana putative transcription factor (MYB55) mRNA, complete cds. | |||
GenBank | AY054575 | 1e-156 | AY054575.1 Arabidopsis thaliana Unknown protein (At4g01680; T15B16.4) mRNA, complete cds. | |||
GenBank | BT000352 | 1e-156 | BT000352.1 Arabidopsis thaliana Unknown protein (At4g01680) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020879491.1 | 0.0 | transcription repressor MYB6 isoform X1 | ||||
Refseq | XP_020879492.1 | 0.0 | transcription repressor MYB6 isoform X1 | ||||
Swissprot | Q8VZQ2 | 5e-87 | MYB61_ARATH; Transcription factor MYB61 | ||||
TrEMBL | A0A178V2Q7 | 0.0 | A0A178V2Q7_ARATH; MYB55 | ||||
STRING | Bostr.4825s0008.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01680.1 | 1e-178 | myb domain protein 55 |
Publications ? help Back to Top | |||
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