PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA32G00171 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | Dof | ||||||||
Protein Properties | Length: 260aa MW: 29780.5 Da PI: 6.7176 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 120.9 | 4.7e-38 | 57 | 115 | 2 | 60 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 +++a++cprC+s+ntkfCyynnyslsqPry+Ck+CrryWt GG+lrnvPvGgg+rknkk AA32G00171 57 PQEARNCPRCNSSNTKFCYYNNYSLSQPRYLCKSCRRYWTDGGSLRNVPVGGGSRKNKK 115 68999****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-25 | 56 | 111 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 3.7E-33 | 59 | 115 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.509 | 61 | 115 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 63 | 99 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MDHHHQYNHD HHHDHEQYYH QMSLGNNNPY NNTINNTPQG PTNGSMLKEE QKMMARPQEA 60 RNCPRCNSSN TKFCYYNNYS LSQPRYLCKS CRRYWTDGGS LRNVPVGGGS RKNKKLLPNL 120 LLPPNSSKLI PDLNPPFLFT SSNPNNNNND LSLSFSVPLQ SQGHFSPSPS SSEGQNRLFT 180 APLGMIQFRQ EYEKGNVGEE EIVYRKDNDD DHHHHDKMMY HYGDDDDDEE EGRKKREEGG 240 SSNEMWSGII LGGHSGGPTW |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA32G00171 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018463356.1 | 1e-82 | PREDICTED: dof zinc finger protein DOF4.1 | ||||
Refseq | XP_018463357.1 | 1e-82 | PREDICTED: dof zinc finger protein DOF4.1 | ||||
Refseq | XP_018463358.1 | 1e-82 | PREDICTED: dof zinc finger protein DOF4.1 | ||||
Swissprot | Q9M161 | 8e-81 | DOF41_ARATH; Dof zinc finger protein DOF4.1 | ||||
TrEMBL | A0A1J3J2I7 | 7e-88 | A0A1J3J2I7_NOCCA; Dof zinc finger protein DOF4.1 | ||||
STRING | XP_010428013.1 | 3e-79 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14695 | 17 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00940.1 | 2e-50 | Dof family protein |