PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA32G00026
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family HD-ZIP
Protein Properties Length: 794aa    MW: 87198.6 Da    PI: 6.5064
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA32G00026genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.53.1e-2090145156
                 TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 +++ +++t++q++eLe++F+++ +p++++r eL+k+l L++rqVk+WFqNrR+++k
  AA32G00026  90 KKRYHRHTPQQIQELESMFKECAHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 145
                 688999***********************************************999 PP
2START194.16.6e-612935191206
                 HHHHHHHHHHHHHHHHC-TT-EEEE......EXCCTTEEEEEEESSS...SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECT CS
       START   1 elaeeaaqelvkkalaeepgWvkss......esengdevlqkfeeskv..dsgealrasgvvdmvlallveellddkeqWdetla....kaetleviss 87 
                 ela++a++elvk+a  +ep+Wvks+      +++n++e+++ f+++k+  + +ea+r+sg+v+ ++  lve+l+++  +W+e+++    +a+t++vis 
  AA32G00026 293 ELALTAMDELVKLAHTDEPLWVKSVeggrerDELNQEEYTRAFSSNKStgFVTEASRTSGMVIINSLALVETLMNSD-RWTEMFPcnvaRATTTDVISA 390
                 5899****************************************9999999**************************.********************* PP

                 T......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSX CS
       START  88 g......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrl 176
                 g      gal+lm+aelq+lsplvp R++ f+R+++q+ +g+w++vdvS+d   + ++   s+s    ++lpSg+++++++ g+skvtwveh+++++++
  AA32G00026 391 GmagtrnGALHLMNAELQVLSPLVPvRNVNFLRFCKQHAEGVWAVVDVSIDAAIPENNsgpSQSHLSIRRLPSGCVVQDMPTGYSKVTWVEHAEYEESQ 489
                 **************************************************9765544444644444445****************************** PP

                 XHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
       START 177 phwllrslvksglaegaktwvatlqrqcek 206
                 +h+l+r+l++sgl +g ++w+atlqrqce+
  AA32G00026 490 IHELYRPLLRSGLGFGSQRWLATLQRQCEC 519
                 ****************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.13E-2077147IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.8E-2179147IPR009057Homeodomain-like
PROSITE profilePS5007116.94187147IPR001356Homeobox domain
SMARTSM003895.5E-1788151IPR001356Homeobox domain
CDDcd000861.07E-1789147No hitNo description
PfamPF000461.0E-1790145IPR001356Homeobox domain
PROSITE patternPS000270122145IPR017970Homeobox, conserved site
PROSITE profilePS5084844.598284522IPR002913START domain
CDDcd088751.94E-111288518No hitNo description
SuperFamilySSF559618.93E-28288519No hitNo description
PfamPF018521.0E-53293519IPR002913START domain
SMARTSM002341.6E-36293519IPR002913START domain
SuperFamilySSF559611.19E-21553778No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009827Biological Processplant-type cell wall modification
GO:0042335Biological Processcuticle development
GO:0043481Biological Processanthocyanin accumulation in tissues in response to UV light
GO:0048765Biological Processroot hair cell differentiation
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 794 aa     Download sequence    Send to blast
MAQAAAAVTL FSPPLTKSAF ASSGLSLALE QPERGTNVGE TSMRNGGDNF DGISVNRRSR  60
EEEHESRSGS DNLEGISGED HDATDKPPRK KRYHRHTPQQ IQELESMFKE CAHPDEKQRL  120
ELSKRLCLET RQVKFWFQNR RTQMKTQLER HENALLRQEN DKLRAENMSI REAMRNPICT  180
NCGGPAILGD VSLEEHHLRI ENARLKDELD RVCAITGKFL GRHITDHNHH TLPPNSSLEL  240
AVGSNGTGGF AFPPDFGGGC LSVVPTPPPH QQQQQQQHPT GINGIDQRSV LLELALTAMD  300
ELVKLAHTDE PLWVKSVEGG RERDELNQEE YTRAFSSNKS TGFVTEASRT SGMVIINSLA  360
LVETLMNSDR WTEMFPCNVA RATTTDVISA GMAGTRNGAL HLMNAELQVL SPLVPVRNVN  420
FLRFCKQHAE GVWAVVDVSI DAAIPENNSG PSQSHLSIRR LPSGCVVQDM PTGYSKVTWV  480
EHAEYEESQI HELYRPLLRS GLGFGSQRWL ATLQRQCECL TILMSSSATS HDNSLTLTYT  540
IYICTQWKAA ITPGGRKSML RLAQRMTFNF CCGISAPSVH SWSKLSVGNV DRDVRVMTRK  600
SVDDPGEPPG IVLSAATSVW LPASPQRLFD FLRNERLRCE WDILSNGGPM QEMAHIAKGQ  660
DHGNSVSLLR SNALNANQSS MLILQETCID ASGALVVYAP VDIPAMHVVM NGGDSSCVAL  720
LPSGFAVLPD GGGPEGTSEH TQRPLGGGSL LTVAFQILVN NLPTAKLTVE SVETVNNLIS  780
CTVQKIRAAL QCDT
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00421DAPTransfer from AT4G00730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA32G00026
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3532530.0AK353253.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-28-B24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020878511.10.0homeobox-leucine zipper protein ANTHOCYANINLESS 2
SwissprotQ0WV120.0ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBLA0A1J3DE850.0A0A1J3DE85_NOCCA; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
STRINGBostr.10064s0036.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM112827105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]