PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | AA32G00019 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 230aa MW: 24694.7 Da PI: 7.5332 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 106.8 | 1.7e-33 | 22 | 120 | 1 | 96 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqp..kkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq.leqlkaelal 96 aC aCk+lrrkC+++C++apyf +eq +fa vhk+FGasnv+kll+++p+++r da++++ +eA+ar+ dP+yG++++il l+qq + q+++e+++ AA32G00019 22 ACGACKLLRRKCVAGCIFAPYFDSEQGgvTQFARVHKVFGASNVSKLLDHVPQHKRGDAVATISFEAQARLIDPIYGSCSHILFLHQQeVPQAETEAEA 120 7***********************994459*************************************************99999876526666666655 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 19.75 | 21 | 125 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.9E-32 | 22 | 120 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 230 aa Download sequence Send to blast |
MAIRPQLNST LKWKKSKSSC GACGACKLLR RKCVAGCIFA PYFDSEQGGV TQFARVHKVF 60 GASNVSKLLD HVPQHKRGDA VATISFEAQA RLIDPIYGSC SHILFLHQQE VPQAETEAEA 120 AATSGSSILD VGRIGASSVS VSVGSVYEYD QLSSIFETSS ASASWGIMEH EHQPIFGVSN 180 PNPNPNLWGS KSNNVGGDKY KSSDDDHQLQ PLPPQLSTTS TTTTSLIKPQ |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-30 | 23 | 123 | 12 | 109 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-30 | 23 | 123 | 12 | 109 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Involved in the positive regulation of tracheary element (TE) differentiation. Involved in a positive feedback loop that maintains or promotes NAC030/VND7 expression that regulates TE differentiation-related genes. {ECO:0000269|PubMed:19088331}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | AA32G00019 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004510942.1 | 7e-47 | LOB domain-containing protein 30-like | ||||
Swissprot | O81323 | 4e-42 | LBD30_ARATH; LOB domain-containing protein 30 | ||||
TrEMBL | A0A1S2YWA9 | 2e-45 | A0A1S2YWA9_CICAR; LOB domain-containing protein 30-like | ||||
STRING | XP_004510942.1 | 3e-46 | (Cicer arietinum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G00220.1 | 2e-41 | LBD family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|