PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA32G00016
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family GRAS
Protein Properties Length: 659aa    MW: 72430.4 Da    PI: 5.4811
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA32G00016genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS317.62.7e-972886442374
        GRAS   2 velLlecAeavss.gdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                 +e+L+++Ae++++ gd++laq +Larl+++ +sp g+p+qR+ +yf+eAL++ l++  ++ +   +  + s+++ + ++ a+k fse+sP+l+f+++t 
  AA32G00016 288 IEQLFKAAEVIDNgGDTALAQGILARLNQHlSSPIGNPFQRASFYFKEALHKLLLNVNDNASP--SHHPFSSYSLIFKIGAYKSFSEISPVLQFANFTS 384
                 789********9978999**********999*************************5555554..444555567************************* PP

        GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl.eleeLrv 196
                 Nqa+le+++  +r+HiiDfdi++G+QW++L+q+L  R++g+psl++T++++    +  el+ t ++L++fA+e++++fe+++l   +l+ l +l+    
  AA32G00016 385 NQALLESFQPFHRLHIIDFDIGYGGQWASLMQELVLRDNGTPSLKLTVFAH----DDLELRFTLDNLKHFASEIKISFEIELL---SLDLLgSLSWPGS 476
                 ***************************************************....9**************************8...5555522333466 PP

        GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295
                 +++E +aVnl+++ +       +++s+ + vL++vk++sP+++v++++ +++ + sF ++++++l+ ++al++slea   ++ e+++k+Er+l++++i+
  AA32G00016 477 SEKEGVAVNLSVAAFW------NIPSYLPLVLRFVKDVSPTIIVCSDRGCERRDVSFPQQVVHSLQSHTALLESLEAV-NANVEAMQKIERFLIQPAIE 568
                 77*******9996554......45788899*********************************************887.6788**************** PP

        GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  vv    +     +   + W++++ ++G++pv+ s+++++qa++l+++++++g++ve++++sl+l+W++r+Lv+vSaWr
  AA32G00016 569 RVVVDGRRG---SEGGGMPWQAMFLQMGLSPVTHSNFTESQAECLVQRTPVRGFHVEKKHNSLLLCWQRRELVAVSAWR 644
                 ***987665...788999************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098537.729262624IPR005202Transcription factor GRAS
PfamPF035149.4E-95288644IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
Sequence ? help Back to Top
Protein Sequence    Length: 659 aa     Download sequence    Send to blast
MPLTFPNYNG KGISSFSFSS SSSLLYQRKF RAQVDQLPLV LSPLEGEEEA SCYAGGVVSV  60
SEPTSVLDAF TTPTPLTTSS ISSTLSSSHA GNSGVGGGDT STAISGDATT VEKCGLMEVE  120
SWEQVSTDEH EHDQDQEHEH EHEQSILRLI MGDAEDPSLD LNNILQTSSL PSDSHFRTLG  180
FGVLDTGFGL DQVQDALCSS GYPGHVPPPT SHALLTSAPP LFQPQETAED KPNLLILHQS  240
QAHFAQNPAM FMPHPYGHFQ DHHLQLEATP PPAKRLNSGP AASQQGIIEQ LFKAAEVIDN  300
GGDTALAQGI LARLNQHLSS PIGNPFQRAS FYFKEALHKL LLNVNDNASP SHHPFSSYSL  360
IFKIGAYKSF SEISPVLQFA NFTSNQALLE SFQPFHRLHI IDFDIGYGGQ WASLMQELVL  420
RDNGTPSLKL TVFAHDDLEL RFTLDNLKHF ASEIKISFEI ELLSLDLLGS LSWPGSSEKE  480
GVAVNLSVAA FWNIPSYLPL VLRFVKDVSP TIIVCSDRGC ERRDVSFPQQ VVHSLQSHTA  540
LLESLEAVNA NVEAMQKIER FLIQPAIERV VVDGRRGSEG GGMPWQAMFL QMGLSPVTHS  600
NFTESQAECL VQRTPVRGFH VEKKHNSLLL CWQRRELVAV SAWRCRRSSS SLRPTFTQP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A7e-3030364418375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA32G00016
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010544366.10.0PREDICTED: scarecrow-like protein 6
SwissprotO813160.0SCL6_ARATH; Scarecrow-like protein 6
TrEMBLA0A087GL400.0A0A087GL40_ARAAL; Uncharacterized protein
STRINGA0A087GL400.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM85742739
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.10.0GRAS family protein
Publications ? help Back to Top
  1. Bari A,Orazova S,Ivashchenko A
    miR156- and miR171-binding sites in the protein-coding sequences of several plant genes.
    Biomed Res Int, 2013. 2013: p. 307145
    [PMID:23936788]
  2. Xue XY, et al.
    Interaction between two timing microRNAs controls trichome distribution in Arabidopsis.
    PLoS Genet., 2014. 10(4): p. e1004266
    [PMID:24699192]