PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA322G00001

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

NF-YB

Protein Properties

Length: 219aa MW: 24997.4 Da PI: 6.3028

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA322G00001	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	178.1	7.9e-56	38	133	2	97
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 +eqdrflPianv+rimkkvlP+n+kiskdaketvqecvsefisf+t+easdkcqrekrktingdd++wa++tlGfedyv plk+yl kyr++egek AA322G00001 38 KEQDRFLPIANVGRIMKKVLPGNGKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDIIWAITTLGFEDYVTPLKIYLCKYRDTEGEK 133 89*******************************************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	4.8E-55	31	164	IPR009072	Histone-fold
SuperFamily	SSF47113	1.09E-41	40	163	IPR009072	Histone-fold
Pfam	PF00808	3.7E-28	43	107	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	3.8E-18	71	89	No hit	No description
PROSITE pattern	PS00685	0	74	90	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	3.8E-18	90	108	No hit	No description
PRINTS	PR00615	3.8E-18	109	127	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MTEESPEEDH GSPGATETNP GSPCLKNNNN NNNNNNNKEQ DRFLPIANVG RIMKKVLPGN 60 GKISKDAKET VQECVSEFIS FITGEASDKC QREKRKTING DDIIWAITTL GFEDYVTPLK 120 IYLCKYRDTE GEKVNSPKQQ RQQQQQQTQQ NNHYQFQEQQ EHNNNISCTS SSNLYISHHH 180 PSPFLPADHQ PFPNIAFSPK SLQKQFPQQH DNIDSIGQW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	8e-45	38	128	2	92	Transcription factor HapC (Eurofung)
4g92_B	8e-45	38	128	2	92	Transcription factor HapC (Eurofung)
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA322G00001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010518434.1	1e-120	PREDICTED: nuclear transcription factor Y subunit B-7-like
Swissprot	Q9SIT9	1e-120	NFYB7_ARATH; Nuclear transcription factor Y subunit B-7
TrEMBL	V4NWB6	1e-118	V4NWB6_EUTSA; Uncharacterized protein
STRING	XP_010467247.1	1e-120	(Camelina sativa)
STRING	XP_010467249.1	1e-120	(Camelina sativa)
STRING	XP_010518434.1	1e-120	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM255	28	229

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G13570.1	1e-111	nuclear factor Y, subunit B7

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]