PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA31G00833
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family AP2
Protein Properties Length: 335aa    MW: 37745.6 Da    PI: 8.7058
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA31G00833genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.91e-1249106156
         AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkklege 56 
                 s y+GV++++++gr++A+++d  s+n  ++k+ + g ++ +e Aa+a++ a++k++g+
  AA31G00833  49 SSYRGVTRHRWTGRYEAHLWDkNSWNEtHTKKGRQGAYDEEEAAARAYDLAALKYWGH 106
                 67*******************88889987777788********************997 PP
2AP253.36.8e-17148199155
         AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa+a++ a+ +++g
  AA31G00833 148 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAARAYDVAAIEYRG 199
                 89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.85E-1549114IPR016177DNA-binding domain
PfamPF008472.0E-949106IPR001471AP2/ERF domain
PROSITE profilePS5103218.80850113IPR001471AP2/ERF domain
SMARTSM003809.4E-2050119IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-1250113IPR001471AP2/ERF domain
PRINTSPR003673.3E-65162IPR001471AP2/ERF domain
CDDcd000181.61E-25148209No hitNo description
SuperFamilySSF541713.53E-18148209IPR016177DNA-binding domain
PfamPF008477.3E-13148199IPR001471AP2/ERF domain
SMARTSM003803.2E-26149213IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-18149207IPR001471AP2/ERF domain
PROSITE profilePS5103218.979149207IPR001471AP2/ERF domain
PRINTSPR003673.3E-6189209IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MAKISRRSKK PTATNKTADK TALASASTIL KTKRKRKSQP RNAPSQRTSS YRGVTRHRWT  60
GRYEAHLWDK NSWNETHTKK GRQGAYDEEE AAARAYDLAA LKYWGHDTLL NFPLGNYEGD  120
VKEMEGHSKE EYIGYLRRKS SGFSRGVSKY RGVARHHHNG RWEARIGRVF GNKYLYLGTY  180
ATQEEAARAY DVAAIEYRGL NAVTNFDISR YLNLPAPENS HAAANLLPEK PDSVSDSGTD  240
PDSNPDSDLN PDLYPNLELG TTNSKEFLKT EKIIEPTTPP EAIPPRRSFP DDIQTYFGCQ  300
DSGKLATEDN IIFGDLDSFI SPSFYNELDD GHSNP
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA31G00833
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009106692.11e-157PREDICTED: AP2-like ethylene-responsive transcription factor At1g79700
SwissprotQ94AN41e-145AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A1J3F4H01e-162A0A1J3F4H0_NOCCA; AP2-like ethylene-responsive transcription factor (Fragment)
STRINGBo6g124080.11e-157(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55327140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.11e-130ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]