PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA31G00806

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

G2-like

Protein Properties

Length: 364aa MW: 40913.8 Da PI: 8.4896

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA31G00806	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106.9	1.1e-33	34	88	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt eLHerFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQk+Rl AA31G00806 34 KPRLRWTVELHERFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRL 88 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.801	31	91	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.9E-32	31	89	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.79E-16	33	89	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.3E-23	34	89	IPR006447	Myb domain, plants
Pfam	PF00249	2.7E-8	36	86	IPR001005	SANT/Myb domain
Pfam	PF14379	1.9E-21	129	169	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010088	Biological Process	phloem development
GO:0010089	Biological Process	xylem development
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence Send to blast
MFHAKKPSSM NGSYENRAMC VQGDSGLVLT TDPKPRLRWT VELHERFVDA VAQLGGPDKA 60 TPKTIMRVMG VKGLTLYHLK SHLQKFRLGK QPHKEYGDHS TKEGSRASAM DIQRNVASSS 120 GMMSRNMNEM QMEVQRRLHE QLEVQRHLQL RIEAQGKYMQ SILERACQTL AGENLAAATA 180 ATAGNAYKGN LGSSSLGPPN SLTFPPFQDL NIYGNTNEQV IINHHTNYHH HDQHQHHHNI 240 DQNHFNTTTT DTNIYLGKKR PNPSFGNDVR KGIMMWSDHQ DNDLTATTTT TNSQIDDDHQ 300 IQIQMATHVS TDLDNSLSEI YERNKSCDEG KLVLERTSPR RSPLSPMMNH NGGLIQGRNS 360 SPFG

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence Send to blast

MFHAKKPSSM NGSYENRAMC VQGDSGLVLT TDPKPRLRWT VELHERFVDA VAQLGGPDKA  60
TPKTIMRVMG VKGLTLYHLK SHLQKFRLGK QPHKEYGDHS TKEGSRASAM DIQRNVASSS  120
GMMSRNMNEM QMEVQRRLHE QLEVQRHLQL RIEAQGKYMQ SILERACQTL AGENLAAATA  180
ATAGNAYKGN LGSSSLGPPN SLTFPPFQDL NIYGNTNEQV IINHHTNYHH HDQHQHHHNI  240
DQNHFNTTTT DTNIYLGKKR PNPSFGNDVR KGIMMWSDHQ DNDLTATTTT TNSQIDDDHQ  300
IQIQMATHVS TDLDNSLSEI YERNKSCDEG KLVLERTSPR RSPLSPMMNH NGGLIQGRNS  360
SPFG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	3e-18	34	90	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	3e-18	34	90	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	3e-18	34	90	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	3e-18	34	90	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor required for phloem identity. Has a dual role both in promoting phloem differentiation and in repressing xylem differentiation during vascular development. Regulates the expression of the transcription factor NAC045 (AC A4VCM0). May activate the transcription of specific genes involved in phosphate uptake or assimilation (PubMed:15592750). Promotes flowering through transcriptional activation of both FT and its transport machinery component, FTIP1 (PubMed:26239308). {ECO:0000269\|PubMed:14614507, ECO:0000269\|PubMed:18523061, ECO:0000269\|PubMed:25081480, ECO:0000269\|PubMed:26239308, ECO:0000305\|PubMed:15592750}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA31G00806

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by phosphate deficiency. {ECO:0000269\|PubMed:15592750}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK316719	0.0	AK316719.1 Arabidopsis thaliana AT1G79430 mRNA, complete cds, clone: RAFL09-57-C07.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018455159.1	0.0	PREDICTED: myb family transcription factor APL-like
Swissprot	Q9SAK5	0.0	APL_ARATH; Myb family transcription factor APL
TrEMBL	A0A1J3CI77	0.0	A0A1J3CI77_NOCCA; Myb family transcription factor APL
STRING	XP_006302459.1	0.0	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5044	27	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79430.2	1e-171	G2-like family protein

Publications ? help Back to Top
Martínez-Navarro AC,Galván-Gordillo SV,Xoconostle-Cázares B,Ruiz-Medrano R Vascular gene expression: a hypothesis. Front Plant Sci, 2013. 4: p. 261 [PMID:23882276] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Kondo Y, et al. Vascular Cell Induction Culture System Using Arabidopsis Leaves (VISUAL) Reveals the Sequential Differentiation of Sieve Element-Like Cells. Plant Cell, 2016. 28(6): p. 1250-62 [PMID:27194709] Shibuta M,Abe M FE Controls the Transcription of Downstream Flowering Regulators Through Two Distinct Mechanisms in Leaf Phloem Companion Cells. Plant Cell Physiol., 2017. 58(11): p. 2017-2025 [PMID:29036620]