PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA31G00468
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family MYB_related
Protein Properties Length: 324aa    MW: 35474.9 Da    PI: 7.1859
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA31G00468genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.33.6e-13136180347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +W++eE++l++ + ++ G+g+Wk I+r + k Rt  q+ s+ qky
       AA31G00468 136 PWSEEEHKLFLIGLQKVGKGDWKGISRNFVKSRTSTQVASHAQKY 180
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.122129185IPR017930Myb domain
SuperFamilySSF466892.32E-16131186IPR009057Homeodomain-like
TIGRFAMsTIGR015572.3E-16132183IPR006447Myb domain, plants
SMARTSM007173.6E-8133183IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.5E-10135180IPR009057Homeodomain-like
PfamPF002496.8E-10136180IPR001005SANT/Myb domain
CDDcd001678.44E-8136181No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MAGGYSSSEI TVGAGGARKE IMLFGVRVVL DPMRKSVSLN NLSQYELPEE EIPKIGGEDG  60
DGHDKNKVDA TTVGYASADD AAPISSSSGG NRERKRGTTL FSFHYSISWF LSMILDLERL  120
LIDFNFSIFE KKSGVPWSEE EHKLFLIGLQ KVGKGDWKGI SRNFVKSRTS TQVASHAQKY  180
FLRRSNLNRR RRRSSLFDMT TETVIGMSME EDHMVIQENS SQSPSLVPEI ANTFPNQPVI  240
QAFPEFLVPI SSGVNNASGN QTQGHVSSSS NLINLVPLTF QSKPSPISLN LSLASSNLND  300
SSPYKIIPSF NGGDTNNSNM IGVA
Functional Description ? help Back to Top
Source Description
UniProtBinds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269|PubMed:21030505}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00236DAPTransfer from AT1G74840Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA31G00468
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269|PubMed:21030505}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024010902.15e-94transcription factor MYB1R1
SwissprotQ2V9B02e-47MY1R1_SOLTU; Transcription factor MYB1R1
TrEMBLE4MXU61e-92E4MXU6_EUTHA; mRNA, clone: RTFL01-41-E23
TrEMBLV4JR154e-92V4JR15_EUTSA; Uncharacterized protein
STRINGXP_006390384.17e-93(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24612669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74840.13e-78MYB_related family protein
Publications ? help Back to Top
  1. Shin D, et al.
    Expression of StMYB1R-1, a novel potato single MYB-like domain transcription factor, increases drought tolerance.
    Plant Physiol., 2011. 155(1): p. 421-32
    [PMID:21030505]