PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA31G00333
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family FAR1
Protein Properties Length: 743aa    MW: 86365.9 Da    PI: 7.4933
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA31G00333genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR183.82.7e-2623108291
        FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                 +Y++YAk+vGF + k +s++s+ ++e+++++f C ++g++++++++     ++ra+ ++gCka+++vk++ dgkw+v+++++eHnHel p
  AA31G00333  23 YYKDYAKSVGFGTAKLSSRRSRASKEFIDAKFSCIRYGSKQQSDDA----INPRASPKIGCKASMHVKRRPDGKWYVYSFVKEHNHELLP 108
                 9****************************************99887....9************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.0E-2423108IPR004330FAR1 DNA binding domain
PfamPF105511.8E-29221313IPR018289MULE transposase domain
PROSITE profilePS5096610.645501537IPR007527Zinc finger, SWIM-type
PfamPF044341.0E-8501535IPR007527Zinc finger, SWIM-type
SMARTSM005755.6E-7512539IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 743 aa     Download sequence    Send to blast
MRCELEEPES LMEFETHEDA YSYYKDYAKS VGFGTAKLSS RRSRASKEFI DAKFSCIRYG  60
SKQQSDDAIN PRASPKIGCK ASMHVKRRPD GKWYVYSFVK EHNHELLPEQ AHFFRSHRNT  120
ELVKTDTRLR RKKNTPAVAK HFSAYNDLNF LDGYMRNQHD KGRRLVINTA DAQILLEFLM  180
RMQEENPKFF FAIDFSEDHL LRNVFWVDSK GIEDYKSFSD VVSFDTTYFV NKYKVPLVLF  240
VGVNHHVQPV LLGCGLIADD TVYTYVWLMQ TWLVAMGGPR PKVILTDQNN PIKAAVAAVF  300
PETRHCFCLW HVLERLPRNL DYWSMWQDTF TKKFYKCIYR SWSEEEFDRR WSKLLDKFHL  360
RDVQWIRSLY EERKYWAPTF MRGITFAGLS TPYRSESVNS LFDRYIQPET SLKDFLEGYG  420
IMLEDRYEEE AKADFDAWHE TPELKSPSPF EKQILLIYTH EIFKKFQLEV LGAAACHLTK  480
ENETEEGITY SVKDFEDGQK YLVDWNESKS DIYCSCRSFE YKGYLCRHTI VVLQMSGVFN  540
IPINYVLQRW TNAARNRHQI SEKLELVQSN IRRLNDLCRR AVILGEEGSL SQESYDIAMA  600
AMKEAFKRCA IKDNTIEHPT RCEEGAIQPI DHIQVENQYI PAAKQMRSEP NVEAGSAPGQ  660
AEARREKRSN LNNGSKKAKH VTQSANVGEG SQEGFAHLAA PRPLQTVMAA QFHNTMPGVF  720
QNLIPAEFHN IPATNMHQNN PSG
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA31G00333
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001320821.10.0FAR1-related sequence 4
RefseqNP_177759.10.0FAR1-related sequence 4
SwissprotQ6NQJ70.0FRS4_ARATH; Protein FAR1-RELATED SEQUENCE 4
TrEMBLA0A178WNR60.0A0A178WNR6_ARATH; FRS4
STRINGBostr.20129s0070.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM11826253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76320.10.0FAR1-related sequence 4
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]