PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA31G00279 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | Dof | ||||||||
Protein Properties | Length: 203aa MW: 23067.4 Da PI: 4.7033 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 66.4 | 4.6e-21 | 25 | 60 | 25 | 60 |
zf-Dof 25 slsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 slsqPry+Ck+CrryWtkGG+lrn+P Ggg+rk+ + AA31G00279 25 SLSQPRYYCKGCRRYWTKGGSLRNIPAGGGCRKRSR 60 689*****************************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50884 | 15.528 | 7 | 60 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.2E-16 | 25 | 60 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 2.0E-11 | 28 | 55 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
VAVYEREQLP KPSFLWTRTS SSLSSLSQPR YYCKGCRRYW TKGGSLRNIP AGGGCRKRSR 60 KRLTSSRTFG RNENQVDETR TGLDHQDEES QPEIDLAAVF ANYVNHQSPS RTQESSPTTT 120 TTTSSDVLDW GVDLGFFGQF DLTQKIEDQE EMFKFQGLLN DKEIQEILNC SFSEESEQLN 180 SPASFMINDD CWINSSDLST FGI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA31G00279 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002890437.2 | 8e-66 | dof zinc finger protein DOF1.2 | ||||
Swissprot | P68349 | 1e-66 | DOF12_ARATH; Dof zinc finger protein DOF1.2 | ||||
TrEMBL | D7KK01 | 2e-64 | D7KK01_ARALL; Dof-type zinc finger domain-containing protein | ||||
STRING | scaffold_102386.1 | 4e-65 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6462 | 26 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21340.1 | 2e-51 | Dof family protein |