PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA31G00269 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | GRAS | ||||||||
Protein Properties | Length: 537aa MW: 60367.5 Da PI: 4.8134 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 422.4 | 3.9e-129 | 167 | 537 | 3 | 374 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101 + L++cA+++s+g+ ++a +++++l+ l+s +gdp qR+aay++e+Laar+a s++ lyk+l+++e + s e+laa+++++e++P++kf++l+aN a AA31G00269 167 QILIRCAHVLSEGNSTQALTMVNELRLLVSIQGDPSQRIAAYMVEGLAARMAASGKFLYKSLKCKEPP---SNERLAAMQILFEICPCFKFGFLAANDA 262 78*****************************************************************9...9*************************** PP GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198 Ile+++gee+vHiiDfdi+qG Q++ L+q+ ++ p++pp+lR+Tgv++p+s+ s l+ +g rL++fA+ l+v+f+f++ va+++++++ + L+++p AA31G00269 263 ILESLKGEEEVHIIDFDINQGNQYMKLIQTVSELPGKPPRLRLTGVDDPDSVqrSIGGLSVIGLRLEQFAKDLNVSFKFKA-VASSTSMVTSSILNCRP 360 **************************************************9988899************************.7**************** PP GRAS 199 .gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivn 296 +E+l+Vn+++qlh+++desvs+ ++rde+L++vksl+Pk+v+vveqe+++n+++Fl rf++a eyysa+f+sl+ +lpres+er++vEr++l+r+ivn AA31G00269 361 gEETLIVNFAFQLHHMPDESVSTINQRDELLHMVKSLNPKLVTVVEQEVNTNTSPFLSRFIDAYEYYSAVFESLDITLPRESQERMNVERQCLARDIVN 459 889************************************************************************************************ PP GRAS 297 vvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +vaceg+er+er e ++kWr+r+ +aGF++ p+s++++++++ ++++ + + y+v+ee g+l +g ++++L+++SaWr AA31G00269 460 IVACEGEERIERYEVAGKWRSRMIMAGFTSKPMSSRVTNTIQNIIKQEYCNKYKVDEEMGELHFGFEGKRLIVASAWR 537 *************************************************888*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 61.653 | 139 | 517 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.3E-126 | 167 | 537 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 537 aa Download sequence Send to blast |
MSVIRSAEAS SASFKNPKLY SLTKSDNNGG NSAQMFDPNR FHNTSFIDSS SIQSYENYFL 60 DSPTDDHVHA FSSCTSVSSY SSLESSPYNQ RPVLVCSMGF EMPFDSTSVS TSLFGDYQVG 120 FQADMMEFDD DKMKSKIQEL EKLLLSDEDD LMEEMLSQTP SQATPKQILI RCAHVLSEGN 180 STQALTMVNE LRLLVSIQGD PSQRIAAYMV EGLAARMAAS GKFLYKSLKC KEPPSNERLA 240 AMQILFEICP CFKFGFLAAN DAILESLKGE EEVHIIDFDI NQGNQYMKLI QTVSELPGKP 300 PRLRLTGVDD PDSVQRSIGG LSVIGLRLEQ FAKDLNVSFK FKAVASSTSM VTSSILNCRP 360 GEETLIVNFA FQLHHMPDES VSTINQRDEL LHMVKSLNPK LVTVVEQEVN TNTSPFLSRF 420 IDAYEYYSAV FESLDITLPR ESQERMNVER QCLARDIVNI VACEGEERIE RYEVAGKWRS 480 RMIMAGFTSK PMSSRVTNTI QNIIKQEYCN KYKVDEEMGE LHFGFEGKRL IVASAWR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 3e-55 | 167 | 537 | 6 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA31G00269 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020867511.1 | 0.0 | scarecrow-like protein 1 | ||||
Refseq | XP_020867512.1 | 0.0 | scarecrow-like protein 1 | ||||
Swissprot | Q9SDQ3 | 0.0 | SCL1_ARATH; Scarecrow-like protein 1 | ||||
TrEMBL | A0A178W5S8 | 0.0 | A0A178W5S8_ARATH; SCL1 | ||||
STRING | fgenesh2_kg.1__2335__AT1G21450.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6953 | 27 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21450.1 | 0.0 | SCARECROW-like 1 |
Publications ? help Back to Top | |||
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