PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA31G00269
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family GRAS
Protein Properties Length: 537aa    MW: 60367.5 Da    PI: 4.8134
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA31G00269genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS422.43.9e-1291675373374
        GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
                 + L++cA+++s+g+ ++a +++++l+ l+s +gdp qR+aay++e+Laar+a s++ lyk+l+++e +   s e+laa+++++e++P++kf++l+aN a
  AA31G00269 167 QILIRCAHVLSEGNSTQALTMVNELRLLVSIQGDPSQRIAAYMVEGLAARMAASGKFLYKSLKCKEPP---SNERLAAMQILFEICPCFKFGFLAANDA 262
                 78*****************************************************************9...9*************************** PP

        GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198
                 Ile+++gee+vHiiDfdi+qG Q++ L+q+ ++ p++pp+lR+Tgv++p+s+  s   l+ +g rL++fA+ l+v+f+f++ va+++++++ + L+++p
  AA31G00269 263 ILESLKGEEEVHIIDFDINQGNQYMKLIQTVSELPGKPPRLRLTGVDDPDSVqrSIGGLSVIGLRLEQFAKDLNVSFKFKA-VASSTSMVTSSILNCRP 360
                 **************************************************9988899************************.7**************** PP

        GRAS 199 .gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivn 296
                  +E+l+Vn+++qlh+++desvs+ ++rde+L++vksl+Pk+v+vveqe+++n+++Fl rf++a eyysa+f+sl+ +lpres+er++vEr++l+r+ivn
  AA31G00269 361 gEETLIVNFAFQLHHMPDESVSTINQRDELLHMVKSLNPKLVTVVEQEVNTNTSPFLSRFIDAYEYYSAVFESLDITLPRESQERMNVERQCLARDIVN 459
                 889************************************************************************************************ PP

        GRAS 297 vvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 +vaceg+er+er e ++kWr+r+ +aGF++ p+s++++++++ ++++ + + y+v+ee g+l +g ++++L+++SaWr
  AA31G00269 460 IVACEGEERIERYEVAGKWRSRMIMAGFTSKPMSSRVTNTIQNIIKQEYCNKYKVDEEMGELHFGFEGKRLIVASAWR 537
                 *************************************************888*************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098561.653139517IPR005202Transcription factor GRAS
PfamPF035141.3E-126167537IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    Send to blast
MSVIRSAEAS SASFKNPKLY SLTKSDNNGG NSAQMFDPNR FHNTSFIDSS SIQSYENYFL  60
DSPTDDHVHA FSSCTSVSSY SSLESSPYNQ RPVLVCSMGF EMPFDSTSVS TSLFGDYQVG  120
FQADMMEFDD DKMKSKIQEL EKLLLSDEDD LMEEMLSQTP SQATPKQILI RCAHVLSEGN  180
STQALTMVNE LRLLVSIQGD PSQRIAAYMV EGLAARMAAS GKFLYKSLKC KEPPSNERLA  240
AMQILFEICP CFKFGFLAAN DAILESLKGE EEVHIIDFDI NQGNQYMKLI QTVSELPGKP  300
PRLRLTGVDD PDSVQRSIGG LSVIGLRLEQ FAKDLNVSFK FKAVASSTSM VTSSILNCRP  360
GEETLIVNFA FQLHHMPDES VSTINQRDEL LHMVKSLNPK LVTVVEQEVN TNTSPFLSRF  420
IDAYEYYSAV FESLDITLPR ESQERMNVER QCLARDIVNI VACEGEERIE RYEVAGKWRS  480
RMIMAGFTSK PMSSRVTNTI QNIIKQEYCN KYKVDEEMGE LHFGFEGKRL IVASAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-551675376375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA31G00269
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020867511.10.0scarecrow-like protein 1
RefseqXP_020867512.10.0scarecrow-like protein 1
SwissprotQ9SDQ30.0SCL1_ARATH; Scarecrow-like protein 1
TrEMBLA0A178W5S80.0A0A178W5S8_ARATH; SCL1
STRINGfgenesh2_kg.1__2335__AT1G21450.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69532744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0SCARECROW-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]