PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA31G00188
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family ARF
Protein Properties Length: 534aa    MW: 58629.6 Da    PI: 5.9881
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA31G00188genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B378.95.1e-25129230199
                 EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                 f k+ltpsd+++ g +++p+ +a+++       ++++  +tl ++d +g +We+++iyr++++r++lt+GW++Fv+a++L +gD+vvF+  ++  +e+ 
  AA31G00188 129 FAKILTPSDANNGGGFSVPRYCADSIfpplnyHSDPPH-QTLAVTDIHGVVWEFRHIYRGTPRRHLLTTGWSKFVNAKKLIAGDSVVFM--KNPAGEMS 224
                 89*****************************9444444.49************************************************..77999999 PP

                 EEEE-S CS
          B3  94 vkvfrk 99 
                 + v+r+
  AA31G00188 225 LCVRRT 230
                 999987 PP
2Auxin_resp70.74.5e-24278358183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                 a+++a+++ +Fevv +P++++s+Fvv++e+v +a+++++  GmR+kma etedss++++ +Gt++++s+      + S W++L+
  AA31G00188 278 AMNRAAQNHPFEVVCYPSSGWSDFVVNAEDVDAAMSIHWRSGMRVKMARETEDSSRITWfQGTISSTSQEA---GRASIWKMLE 358
                 67999***************************************************************944...599****996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.44E-29113229IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-33124234IPR015300DNA-binding pseudobarrel domain
CDDcd100175.73E-22128229No hitNo description
SMARTSM010191.8E-19129231IPR003340B3 DNA binding domain
PROSITE profilePS5086312.901129231IPR003340B3 DNA binding domain
PfamPF023621.6E-21129229IPR003340B3 DNA binding domain
PfamPF065075.1E-21278357IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0010208Biological Processpollen wall assembly
GO:0048830Biological Processadventitious root development
GO:0052543Biological Processcallose deposition in cell wall
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    Send to blast
MSRSSATTAD IPSQVDRRIW RACAGAAVRV PTLYSRVYYF PEGHVEHYWF NYAFSSNPSA  60
SFTVPCIPSS VPYVPCIVSS VELLADSITD EVFTSLQLQP VPREQFVASN YSMLPRDVIE  120
DEENEIVSFA KILTPSDANN GGGFSVPRYC ADSIFPPLNY HSDPPHQTLA VTDIHGVVWE  180
FRHIYRGTPR RHLLTTGWSK FVNAKKLIAG DSVVFMKNPA GEMSLCVRRT TSKIGPYEGA  240
FPSSYQNTEV AEGDDAGEKT PFRRTGKGKL SSRAVAEAMN RAAQNHPFEV VCYPSSGWSD  300
FVVNAEDVDA AMSIHWRSGM RVKMARETED SSRITWFQGT ISSTSQEAGR ASIWKMLEVT  360
WDEPEILKNV KRVNPWQVEL ISGGPTMFSS GLSIPQPKRL KVPEPQGASG FMSIEARSTL  420
PFLPSFLTSH SPAINGMQGA RHFDSSSFTE NFLTQLPPNP EDPKVSTTIS IGSPPFDNLS  480
PNSTTTNQSS GTDPLTKARA SSFQLFGKTI FTDLADSPPG ESGTSDEDGS KNST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A9e-611537951388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA31G00188
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020891389.10.0auxin response factor 17 isoform X1
SwissprotQ84WU60.0ARFQ_ARATH; Auxin response factor 17
TrEMBLA0A1J3ET560.0A0A1J3ET56_NOCCA; Auxin response factor
TrEMBLA0A1J3HEW70.0A0A1J3HEW7_NOCCA; Auxin response factor (Fragment)
TrEMBLA0A1J3K8190.0A0A1J3K819_NOCCA; Auxin response factor
STRINGscaffold_202748.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58027130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.10.0auxin response factor 17
Publications ? help Back to Top
  1. Shi ZH, et al.
    Overexpression of AtTTP affects ARF17 expression and leads to male sterility in Arabidopsis.
    PLoS ONE, 2015. 10(3): p. e0117317
    [PMID:25822980]
  2. de Lucas M, et al.
    Transcriptional Regulation of Arabidopsis Polycomb Repressive Complex 2 Coordinates Cell-Type Proliferation and Differentiation.
    Plant Cell, 2016. 28(10): p. 2616-2631
    [PMID:27650334]
  3. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  4. Wang B, et al.
    Fine regulation of ARF17 for anther development and pollen formation.
    BMC Plant Biol., 2017. 17(1): p. 243
    [PMID:29258431]
  5. Wójcik AM,Nodine MD,Gaj MD
    miR160 and miR166/165 Contribute to the LEC2-Mediated Auxin Response Involved in the Somatic Embryogenesis Induction in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 2024
    [PMID:29321785]
  6. Lin JS, et al.
    MicroRNA160 Modulates Plant Development and Heat Shock Protein Gene Expression to Mediate Heat Tolerance in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 68
    [PMID:29449855]