PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA31G00177
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family MIKC_MADS
Protein Properties Length: 345aa    MW: 39366.6 Da    PI: 4.5714
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA31G00177genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF82.43e-26958150
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                krien++nrqvtfskRrng++KKA+ELS+LCd+++a+++fs++++l  +s
  AA31G00177  9 KRIENTTNRQVTFSKRRNGLIKKAYELSILCDIDIALLMFSPSDRLSLFS 58
                79******************************************998776 PP
2K-box258.1e-10121198986
       K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkeke 86 
                 + +++ e+l+qe+ kL++++++ ++e+R++  + +   ++++ +  e+qL + l+++ ++++++l ++++      ++
  AA31G00177 121 AINSDVEELEQEVYKLQQQLQMAEEELRKYEPDPIRFTNMEDFEASEKQLLETLTRVSQRREHVLSDHLSSYDASAEM 198
                 5567899************************************************************99876655555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004329.9E-36160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006628.805161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.7E-28279IPR002100Transcription factor, MADS-box
CDDcd002651.85E-34275No hitNo description
PRINTSPR004042.2E-24323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003194.3E-241055IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-242338IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-243859IPR002100Transcription factor, MADS-box
PfamPF014865.4E-6125198IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MGRVKLEIKR IENTTNRQVT FSKRRNGLIK KAYELSILCD IDIALLMFSP SDRLSLFSGK  60
TRIEDVFTRY INLPDQERDN ALLFPDQSRR PDFQSKEYLL RTLQQLKTEN DIALQLTNPT  120
AINSDVEELE QEVYKLQQQL QMAEEELRKY EPDPIRFTNM EDFEASEKQL LETLTRVSQR  180
REHVLSDHLS SYDASAEMQQ SMVNNGPFVN DVVGGWLSEN GPNQAHLFDT SAHSNHLTSS  240
TTMYEPLLQG SSSSSNQNNI NDCHVSNPNG DMFQEWAQAY NSTTTAINSA NVGPSTLFTP  300
QMHQQHGLVG PTIEENEIPV MSTRETQADH EVSDYDIRMP QLSSQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A5e-18190191MEF2 CHIMERA
6bz1_B5e-18190191MEF2 CHIMERA
6bz1_C5e-18190191MEF2 CHIMERA
6bz1_D5e-18190191MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms a heterodimer with the MADS-box protein AGL30 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA31G00177
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020889797.10.0agamous-like MADS-box protein AGL66
SwissprotQ1PFC20.0AGL66_ARATH; Agamous-like MADS-box protein AGL66
TrEMBLD7KV610.0D7KV61_ARALL; MADS-box family protein
STRINGfgenesh2_kg.2__2091__AT1G77980.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21792365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77980.11e-179AGAMOUS-like 66
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]