PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA31G00060 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | bHLH | ||||||||
Protein Properties | Length: 230aa MW: 25704.2 Da PI: 6.509 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27.3 | 6.6e-09 | 46 | 102 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC.....TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkas..kapskKlsKaeiLekAveYIksLq 55 +++ hn+rEr RR r+ ++ +L +llP +s + +kK +i ++v YI +Lq AA31G00060 46 KKEDHNARERLRRMRLHASYLTLGTLLPDSSssSSFKKKWCAPSIIDRVVAYIPKLQ 102 6889*************************6658888899***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 8.77E-11 | 43 | 117 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 11.966 | 45 | 101 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.2E-9 | 46 | 106 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.57E-5 | 46 | 106 | No hit | No description |
Pfam | PF00010 | 1.1E-5 | 46 | 102 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.4E-5 | 51 | 107 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
EDPLSLIFNP DQEATSLTST STLLHRLHIP VETPLKEGQD GSNGAKKEDH NARERLRRMR 60 LHASYLTLGT LLPDSSSSSS FKKKWCAPSI IDRVVAYIPK LQTEVEELVL RKQQIVEAME 120 RRKSEELELS VTSPLRTISV HELGEASGEA IVQICTRKAK EDEFSNLLVV MEAQGLSILS 180 ASTAQVCRDQ QVVCYHFHVK MGENGCGDAH DHGHDDYITM LKKNIIKSLS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA31G00060 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018456305.1 | 3e-76 | PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC108827412 | ||||
Swissprot | F4I8F9 | 2e-72 | BH160_ARATH; Transcription factor bHLH160 | ||||
TrEMBL | A0A1J3J7M1 | 9e-84 | A0A1J3J7M1_NOCCA; Transcription factor ORG2 | ||||
STRING | XP_006390794.1 | 1e-74 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10558 | 22 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71200.1 | 1e-68 | bHLH family protein |
Publications ? help Back to Top | |||
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