PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA30G00265

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

LBD

Protein Properties

Length: 250aa MW: 27487.3 Da PI: 8.5019

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA30G00265	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	96.8	2.2e-30	2	103	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C++C+vlr++C++ C+l+p++ +++q +++ +v+k+FG++ ++++++++pe +r+++++sl++eA+ r+ +Pv+Gavg++++++++++q+++e+ AA30G00265 2 SCNGCRVLRKGCSETCILRPCLqwiesAESQGHATVFVAKFFGRAGLMSFISSVPEPNRPALFQSLLFEACGRTVNPVNGAVGMLWTGNWHVCQAAVET 100 6*******************9999777889**************************************************************999 PP DUF260 95 all 97 +l+ AA30G00265 101 VLR 103 876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	19.391	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.3E-25	2	101	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence Send to blast
MSCNGCRVLR KGCSETCILR PCLQWIESAE SQGHATVFVA KFFGRAGLMS FISSVPEPNR 60 PALFQSLLFE ACGRTVNPVN GAVGMLWTGN WHVCQAAVET VLRGGALRPI ISDLAIDESK 120 SLISSDESSE ICNNKQLLHH SRFSISRSKL STTKIEESQV NRKRFKSESE SDSDLDLQLN 180 HVLFSSPKSS LNTSTPPLPP SFPPSFCKAV ISDRPVSPSM ISEESVTTSY WGNGSFKKNK 240 GERKLLNLFV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA30G00265

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB473874	1e-100	AB473874.1 Arabidopsis thaliana ASL41 mRNA for ASYMMETRIC LEAVES2-like 41 protein, complete cds.
GenBank	AY072144	1e-100	AY072144.1 Arabidopsis thaliana unknown protein (At4g37540) mRNA, complete cds.
GenBank	AY122976	1e-100	AY122976.1 Arabidopsis thaliana unknown protein (At4g37540) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_195470.1	1e-111	LOB domain-containing protein 39
Swissprot	Q9SZE8	1e-112	LBD39_ARATH; LOB domain-containing protein 39
TrEMBL	A0A178V3Q3	1e-109	A0A178V3Q3_ARATH; LBD39
STRING	Bostr.7867s1612.1.p	1e-111	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM821	28	122

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37540.1	1e-94	LOB domain-containing protein 39