PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | AA30G00184 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 218aa MW: 25135.1 Da PI: 5.2412 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.5 | 6.3e-20 | 55 | 107 | 5 | 57 |
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +++++eq++ Le F ++++ e++ +LA++lgL+ rqV vWFqNrRa++k+ AA30G00184 55 RKLSDEQVNMLEMSFGDEHKLESERKDKLAAELGLDPRQVAVWFQNRRARWKN 107 5899***********************************************95 PP | |||||||
2 | HD-ZIP_I/II | 121.6 | 3.8e-39 | 53 | 142 | 2 | 91 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kr+ls+eqv++LE+sF e+kLe+erK +la eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk+++d++ +++rLe+ev +L+e+l AA30G00184 53 RKRKLSDEQVNMLEMSFGDEHKLESERKDKLAAELGLDPRQVAVWFQNRRARWKNKRLEEEYTKLKNSHDNVLLQKCRLESEVVQLKEQL 142 8**************************************************************************************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 1.1E-19 | 51 | 112 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.20E-15 | 53 | 109 | No hit | No description |
PROSITE profile | PS50071 | 16.503 | 53 | 108 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 7.94E-18 | 54 | 116 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.4E-20 | 55 | 115 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 3.9E-17 | 55 | 107 | IPR001356 | Homeobox domain |
PRINTS | PR00031 | 6.0E-6 | 79 | 88 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 83 | 106 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 6.0E-6 | 88 | 104 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 218 aa Download sequence Send to blast |
MTLISQLYSD VYTHNIIPQQ GEVKAPRRRR KKSKGTTVVT GGGGDGSNNC LFRKRKLSDE 60 QVNMLEMSFG DEHKLESERK DKLAAELGLD PRQVAVWFQN RRARWKNKRL EEEYTKLKNS 120 HDNVLLQKCR LESEVVQLKE QLFDAEREIQ RLAERVEAEG GSSNSPISSS VSVELNETMP 180 FFGDYGVRDD DGDVYDNLFY PPTENVYIDG TEWMSLYM |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00473 | DAP | Transfer from AT4G36740 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | AA30G00184 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010446748.1 | 1e-110 | PREDICTED: homeobox-leucine zipper protein ATHB-40 | ||||
Swissprot | O23208 | 1e-106 | ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40 | ||||
TrEMBL | A0A398ANQ7 | 1e-108 | A0A398ANQ7_BRACM; Uncharacterized protein | ||||
STRING | XP_010446748.1 | 1e-109 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2208 | 26 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G36740.1 | 3e-88 | homeobox protein 40 |
Publications ? help Back to Top | |||
---|---|---|---|
|