PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA30G00181

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

GRAS

Protein Properties

Length: 451aa MW: 50363.5 Da PI: 4.8782

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA30G00181	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	314.3	2.6e-96	80	450	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 +e L++++++v+s++l+l q +L+rl+++ +sp g+p+qR+a+yf+eAL + l++ + + l + +s+++ ++++ a+k fs +sPi+ fsh+taN AA30G00181 80 IEDLIRVVDCVDSDELQLGQVILSRLNQRlRSPMGRPLQRAAFYFKEALGTILTG----VNRDL-NRLSSWTEIVQRIRAVKEFSGISPIPLFSHFTAN 173 678***********************99********************9....33333.344445679********************* PP GRAS 100 qaIleavege.........ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl 189 qaIle+++ + vH++Df+i+ G+Q+++L++++a+++ + lR+T+v+ + +s e++ ++e+L +fA+e++++f+++++++k++e+l AA30G00181 174 QAILESLNWQsnsnspsvtPFVHVVDFEIGFGGQYASLMREIAEKSVSGGFLRVTAVVTE--DSGVETRLVKENLIQFAAEMKIRFQIEFVLMKTFEML 270 **9877666777777789*********************************5..5999***************************** PP GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adh.nsesFlerflealeyysalfdsleaklpreseerikv 285 +++++r+ +gE+++V l+ +++r l ++ ++ ++++ ++++s k+vv+v++e ++ +++sF ++f++ale+y+++++sl+a +p+ + ++ + AA30G00181 271 SFKAIRFVEGEKTIVLLSPAIFRGL--NGMIS----DFVNNLRRVSTKIVVFVDSEgwTEIgEAGSFRREFVSALEFYTMVLESLDAAAPPGDLVKKII 363 ********************9..34444....6***************666666778****************************** PP GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 E+++l+++i+ vv ++ ++r + e ++Wre++ +aG++pv+ls++a qa++ll+k +++g++v +++g+lvl+W++r++v++SaWr AA30G00181 364 EAFVLRPKISAVVEAAADRRHAAGE--MNWREAFCAAGMRPVQLSQFADFQAECLLEKAQVRGFHVAKRQGELVLCWHGRAMVATSAWR 450 ************999766655..9**********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	37.296	53	430	IPR005202	Transcription factor GRAS
Pfam	PF03514	8.9E-94	80	450	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0030154	Biological Process	cell differentiation
GO:0048831	Biological Process	regulation of shoot system development

Sequence ? help Back to Top
Protein Sequence Length: 451 aa Download sequence Send to blast
MDWDSIVREL ELDDDSSTTP SLKSGFTSST IVPLFSTVDS NLPSFPDQIH PSDFESPDVF 60 QTTGFGFSDF DGVNGGFDFI EDLIRVVDCV DSDELQLGQV ILSRLNQRLR SPMGRPLQRA 120 AFYFKEALGT ILTGVNRDLN RLSSWTEIVQ RIRAVKEFSG ISPIPLFSHF TANQAILESL 180 NWQSNSNSPS VTPFVHVVDF EIGFGGQYAS LMREIAEKSV SGGFLRVTAV VTEDSGVETR 240 LVKENLIQFA AEMKIRFQIE FVLMKTFEML SFKAIRFVEG EKTIVLLSPA IFRGLNGMIS 300 DFVNNLRRVS TKIVVFVDSE GWTEIGEAGS FRREFVSALE FYTMVLESLD AAAPPGDLVK 360 KIIEAFVLRP KISAVVEAAA DRRHAAGEMN WREAFCAAGM RPVQLSQFAD FQAECLLEKA 420 QVRGFHVAKR QGELVLCWHG RAMVATSAWR F

Sequence ? help Back to Top

Protein Sequence Length: 451 aa Download sequence Send to blast

MDWDSIVREL ELDDDSSTTP SLKSGFTSST IVPLFSTVDS NLPSFPDQIH PSDFESPDVF  60
QTTGFGFSDF DGVNGGFDFI EDLIRVVDCV DSDELQLGQV ILSRLNQRLR SPMGRPLQRA  120
AFYFKEALGT ILTGVNRDLN RLSSWTEIVQ RIRAVKEFSG ISPIPLFSHF TANQAILESL  180
NWQSNSNSPS VTPFVHVVDF EIGFGGQYAS LMREIAEKSV SGGFLRVTAV VTEDSGVETR  240
LVKENLIQFA AEMKIRFQIE FVLMKTFEML SFKAIRFVEG EKTIVLLSPA IFRGLNGMIS  300
DFVNNLRRVS TKIVVFVDSE GWTEIGEAGS FRREFVSALE FYTMVLESLD AAAPPGDLVK  360
KIIEAFVLRP KISAVVEAAA DRRHAAGEMN WREAFCAAGM RPVQLSQFAD FQAECLLEKA  420
QVRGFHVAKR QGELVLCWHG RAMVATSAWR F

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	2e-25	85	449	24	377	Protein SCARECROW
5b3h_D	2e-25	85	449	24	377	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA30G00181

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006283643.1	0.0	scarecrow-like protein 15
Swissprot	O23210	0.0	SCL15_ARATH; Scarecrow-like protein 15
TrEMBL	A0A1J3D5R3	0.0	A0A1J3D5R3_NOCCA; Scarecrow-like protein 15 (Fragment)
STRING	Cagra.5996s0001.1.p	0.0	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4291	28	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36710.1	0.0	GRAS family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]