PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA30G00171
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family GATA
Protein Properties Length: 209aa    MW: 23278.4 Da    PI: 7.0952
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA30G00171genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.52.4e-2087121135
        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                 C+nC tt+TplWR+gp+g+k+LCnaCG++++k+++
  AA30G00171  87 CTNCDTTSTPLWRNGPRGPKSLCNACGIRFKKEER 121
                 ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011414.27281117IPR000679Zinc finger, GATA-type
SMARTSM004011.3E-1781143IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.52E-1384121No hitNo description
Gene3DG3DSA:3.30.50.105.9E-1785122IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.47E-1486118No hitNo description
PfamPF003206.3E-1887121IPR000679Zinc finger, GATA-type
PROSITE patternPS00344087112IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MGFSMFFPSE NDTVYDPYLS SSSVDCTLSL GTPSTRLSND HRELDRRRFS TPNSNNNISS  60
SALAWDFLNG GKKSGGGGEN ALAARRCTNC DTTSTPLWRN GPRGPKSLCN ACGIRFKKEE  120
RRKTAGGGST VAGVPTANYH GGANYYNNHY TSSTSPWIHQ HQYYNTQRVP YYSPAENEYS  180
FVDDVRDDDH DVTPDPFLSW RLNVADFTM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16977GGKKSGGGG
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. Regulates both flower and shoot apical meristem (SAM) development, especially for establishing organ boundaries in shoots and flowers, probably by controlling the number and position of WUS-expressing cells (PubMed:23335616, PubMed:25077795). {ECO:0000250, ECO:0000269|PubMed:23335616, ECO:0000269|PubMed:25077795}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00472DAPTransfer from AT4G36620Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA30G00171
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by HAN. {ECO:0000269|PubMed:23335616}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018480826.13e-86PREDICTED: GATA transcription factor 19-like
SwissprotQ6QPM28e-72GAT19_ARATH; GATA transcription factor 19
TrEMBLA0A3P6B1R11e-85A0A3P6B1R1_BRAOL; Uncharacterized protein
STRINGXP_006411982.11e-84(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61591746
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36620.12e-70GATA transcription factor 19
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]