PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA2G00191
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family RAV
Protein Properties Length: 345aa    MW: 39792 Da    PI: 8.1842
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA2G00191genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP232.61.9e-104086254
        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54
               +ykGV +   +g W A+I+       +kr++lg+f t  eAa a++ a  kl+
  AA2G00191 40 KYKGVVQQQ-NGHWGAQIYAD-----HKRIWLGTFKTSAEAAIAYDSASIKLR 86
               8****9888.8******9993.....4*********************99987 PP
2B391.65.9e-29172269184
                EEEE-..-HHHHTT-EE--HHH.HTT..............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                f+k+ltpsdv+k++rlv+pkk+a ++              gg + e+++l+++d+  r+W+++++y+k+s+++v+t+GW++Fvk+++Lke+D++vF+ 
  AA2G00191 172 FQKELTPSDVGKLNRLVIPKKYAVKYlpyisetetetepaGGGSVEDVELVFYDRAMRQWKFRYCYWKSSQSFVFTRGWNGFVKEKNLKEKDVIVFYN 269
                99****************************99999888885555699*************************************************93 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.77E-213999No hitNo description
PfamPF008472.9E-64086IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-124097IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.1E-164098IPR001471AP2/ERF domain
PROSITE profilePS5103216.3574097IPR001471AP2/ERF domain
SMARTSM003806.1E-1640103IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.104.9E-32168270IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.22E-27170271IPR015300DNA-binding pseudobarrel domain
CDDcd100173.02E-26171268No hitNo description
PfamPF023622.1E-26172271IPR003340B3 DNA binding domain
PROSITE profilePS5086312.407172283IPR003340B3 DNA binding domain
SMARTSM010193.8E-19172282IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MEMNEAEETS ASDLVLRLSK RVKTTHGNGK LSLSNTTIAK YKGVVQQQNG HWGAQIYADH  60
KRIWLGTFKT SAEAAIAYDS ASIKLRIGDI NSHRNFPLSD LTIHEPNFQE CYTTEAVLTM  120
IKDGSYQHKF KDFLRIRSQI VASINTIGPK QSQETKKDQD SSDKWFTCTQ LFQKELTPSD  180
VGKLNRLVIP KKYAVKYLPY ISETETETEP AGGGSVEDVE LVFYDRAMRQ WKFRYCYWKS  240
SQSFVFTRGW NGFVKEKNLK EKDVIVFYNC DTTSNMNRLE NQKNKFLMID VHYFTENGFV  300
AEEVNRMVCE SPDEVKSKVE DKEPKDSTEE SNKKGFMLFG VRIMQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A4e-2617126713100DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA2G00191
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002891618.21e-164AP2/ERF and B3 domain-containing transcription factor At1g51120
SwissprotQ9C6881e-163RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120
TrEMBLD7KHN01e-163D7KHN0_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.1__4181__AT1G51120.11e-164(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17052788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.11e-162RAV family protein