PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA2G00168 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | RAV | ||||||||
Protein Properties | Length: 312aa MW: 36362.2 Da PI: 9.9822 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 29.4 | 1.9e-09 | 41 | 86 | 2 | 53 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkl 53 +ykGV + +g + A+I+ + +r++lg+f +a eAa a++ a ++ AA2G00168 41 KYKGVVKQH-NGNYGAQIYS------NhQRIWLGTFKSAIEAAIAYDSASMAY 86 8****8777.8******999......44*******************997776 PP | |||||||
2 | B3 | 88.8 | 4.3e-28 | 171 | 264 | 1 | 83 |
EEEE-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 f+k+lt sdv+k++rlv+pkk+a ++ ++ ee+++++++d++g++W+++++y+k+s+++vl+kGW +Fvk+++Lk++DfvvF+ AA2G00168 171 FEKELTLSDVGKLNRLVIPKKYAIKYlskykneketsFSSMEEDMEIVMYDKEGKQWKFRFCYWKSSQSFVLSKGWISFVKEKNLKAKDFVVFY 264 89**************************9977666664444499*************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 4.18E-11 | 41 | 94 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 4.7E-14 | 41 | 94 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 14.605 | 41 | 96 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.3E-11 | 41 | 102 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.57E-16 | 41 | 94 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 6.2E-32 | 162 | 265 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.44E-27 | 168 | 269 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.72E-26 | 169 | 264 | No hit | No description |
Pfam | PF02362 | 1.8E-25 | 171 | 265 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.719 | 171 | 291 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 9.4E-22 | 171 | 278 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 312 aa Download sequence Send to blast |
MNTEQQTTIT QTSTSNDTVL PFKKRKRPND NTTTAFPNAI KYKGVVKQHN GNYGAQIYSN 60 HQRIWLGTFK SAIEAAIAYD SASMAYNSAA TAYNSEFNSH RNLPFSNITI QESNFQKHYT 120 TDVILNMIKD GSYHRKFQEF LKFQPQNIKN FTKKQETNQE LKNSSTITHL FEKELTLSDV 180 GKLNRLVIPK KYAIKYLSKY KNEKETSFSS MEEDMEIVMY DKEGKQWKFR FCYWKSSQSF 240 VLSKGWISFV KEKNLKAKDF VVFYKCDVTN TLEGQNGQKK SILMIDINRF SGVRDEEEIE 300 KKKVRLFGVD IN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 9e-24 | 169 | 289 | 6 | 112 | B3 domain-containing transcription factor NGA1 |
5os9_B | 9e-24 | 169 | 289 | 6 | 112 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA2G00168 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_175524.1 | 1e-104 | AP2/B3 transcription factor family protein | ||||
Swissprot | Q9C688 | 1e-105 | RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120 | ||||
TrEMBL | A0A178WMW5 | 1e-103 | A0A178WMW5_ARATH; Uncharacterized protein | ||||
STRING | AT1G51120.1 | 1e-103 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1705 | 27 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51120.1 | 1e-104 | RAV family protein |