PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA2G00145
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family GRAS
Protein Properties Length: 465aa    MW: 52291.7 Da    PI: 6.6751
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA2G00145genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS512.81.3e-156574621374
       GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                l++lLl+cA++v+sg+l++a+a+L++ls+laspdgd+mqR+aayfteALa+r+++s+++lykal++++ + +n+see+++ +lf+e++Pilk+s+l++N+
  AA2G00145  57 LIHLLLTCANHVASGSLQNANAALEQLSHLASPDGDTMQRIAAYFTEALANRILKSWPGLYKALNATQIKINNVSEEIHVKRLFFEMFPILKLSYLLTNR 156
                689************************************************************************************************* PP

       GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgE 200
                aI ea+ege++vH+iD+d+s+++QW+aL+q ++sRpegpp+lRiTgv++    +ke l +++++L + Ae+l++pf+fn+ v +rl++l++e+Lrvk+gE
  AA2G00145 157 AIIEAMEGEKMVHVIDLDASEPAQWIALIQGFNSRPEGPPHLRITGVHH----QKEVLDQMAHKLIEEAEKLDIPFQFNP-VLSRLDCLNVEQLRVKTGE 251
                *************************************************....9**************************.7****************** PP

       GRAS 201 alaVnlvlqlhrll....................................desvsles.erdevLklvkslsPkvvvvveqeadhnsesFlerflealey 263
                ala+++vlqlh++l                                    ++s++++s + d++L+ ++slsPkv+vv+eq++dhn+++++er+le+l++
  AA2G00145 252 ALAISSVLQLHNFLanpelrraarsshgsaaeipenemsnnngyspsndsASSLPSPSgRMDRFLSSIWSLSPKVMVVTEQDSDHNGSTLMERLLESLYT 351
                ***********************************************97766666666899*************************************** PP

       GRAS 264 ysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWk 363
                y+alfd+le+k+pr+s++rikvE++ +g+ei+n++aceg+errerhe+lekW++rle +GF++vpls++a+ qa++ll+ +++dgyr++e sgs+v++W+
  AA2G00145 352 YAALFDCLETKVPRTSQDRIKVEKMHFGEEIKNIIACEGFERRERHEKLEKWSQRLELSGFGNVPLSYYAMLQARRLLQGCGFDGYRIKEASGSAVICWQ 451
                **************************************************************************************************** PP

       GRAS 364 drpLvsvSaWr 374
                drpL+svSaWr
  AA2G00145 452 DRPLYSVSAWR 462
                **********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098559.06131442IPR005202Transcription factor GRAS
PfamPF035144.4E-15457462IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MVAMFQEDGT SSVASSPLQV FSTMPITRPN NTTTFLASSS PFHCLQDLKP EERGLYLIHL  60
LLTCANHVAS GSLQNANAAL EQLSHLASPD GDTMQRIAAY FTEALANRIL KSWPGLYKAL  120
NATQIKINNV SEEIHVKRLF FEMFPILKLS YLLTNRAIIE AMEGEKMVHV IDLDASEPAQ  180
WIALIQGFNS RPEGPPHLRI TGVHHQKEVL DQMAHKLIEE AEKLDIPFQF NPVLSRLDCL  240
NVEQLRVKTG EALAISSVLQ LHNFLANPEL RRAARSSHGS AAEIPENEMS NNNGYSPSND  300
SASSLPSPSG RMDRFLSSIW SLSPKVMVVT EQDSDHNGST LMERLLESLY TYAALFDCLE  360
TKVPRTSQDR IKVEKMHFGE EIKNIIACEG FERRERHEKL EKWSQRLELS GFGNVPLSYY  420
AMLQARRLLQ GCGFDGYRIK EASGSAVICW QDRPLYSVSA WRCRK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-624946411381Protein SCARECROW
5b3h_A4e-624946410380Protein SCARECROW
5b3h_D4e-624946410380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA2G00145
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010500605.10.0PREDICTED: scarecrow-like protein 3
RefseqXP_010500606.10.0PREDICTED: scarecrow-like protein 3
RefseqXP_010500607.10.0PREDICTED: scarecrow-like protein 3
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A178WJ790.0A0A178WJ79_ARATH; SCL3
STRINGXP_010500605.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40982759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]