PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA2G00103 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | bHLH | ||||||||
Protein Properties | Length: 302aa MW: 34035.4 Da PI: 8.1954 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35 | 2.6e-11 | 84 | 127 | 8 | 55 |
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 Er RR+++++ f++L +llP++ +K +K++i+ +Av+ Ik+L+ AA2G00103 84 TERERRKKMRNMFNNLHTLLPQL----PPKADKSTIVDEAVNTIKNLE 127 6*********************6....39****************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 8.51E-14 | 74 | 138 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 12.938 | 76 | 126 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.1E-13 | 80 | 139 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.38E-10 | 81 | 131 | No hit | No description |
SMART | SM00353 | 6.7E-6 | 84 | 132 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.4E-8 | 84 | 127 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 302 aa Download sequence Send to blast |
MSIHYDMTNL QEGFTWGIPN SDDSKGGGKE IEKQSLLLQP FEPSENLIPM AKKSIKSKKR 60 AKRDGKDHVD DNDESQDHEI HIWTERERRK KMRNMFNNLH TLLPQLPPKA DKSTIVDEAV 120 NTIKNLEQTL AKLQSQKLEK LEKLQYSSST STTPTTTFPI VTPYDPSSSS SPTTLITPLN 180 QTQILPQNSI TTTLLTDQIS SDVSGNLPYP CNNPNIGFDT WTSNNLVLNI CGNEGVFNLC 240 CPKNKLGFFT NVCYVLEKYN IEVVTANISS NVFRKTYMIQ TQGRSNIIGD LQKYTNSRNK 300 GI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that controls embryo growth (PubMed:18567831, PubMed:18849529, PubMed:23318634). Regulates endosperm breakdown and embryonic epidermal development. Regulates the expression of SBT2.4/ALE1 (PubMed:18849529, PubMed:23318634). Involved in embryonic cuticle formation upstream of SBT2.4/ALE1 (PubMed:23318634). Does not seem to be a general regulator of endosperm patterning. May control specific signaling pathways that coordinate embryo invasion and breakdown of surrounding endosperm tissues (PubMed:18849529). Required for the production the embryo sheath, an extracuticular endosperm-derived structure at the surface of the embryo. Acts upstream of KRS (PubMed:28696222). {ECO:0000269|PubMed:18567831, ECO:0000269|PubMed:18849529, ECO:0000269|PubMed:23318634, ECO:0000269|PubMed:28696222}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA2G00103 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009145108.1 | 1e-115 | PREDICTED: transcription factor bHLH95-like | ||||
Swissprot | Q9FXA3 | 8e-95 | BH095_ARATH; Transcription factor bHLH95 | ||||
TrEMBL | A0A397ZAF8 | 1e-113 | A0A397ZAF8_BRACM; Uncharacterized protein | ||||
TrEMBL | M4FHU2 | 1e-113 | M4FHU2_BRARP; Uncharacterized protein | ||||
STRING | Bra040671.1-P | 1e-114 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5074 | 25 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49770.1 | 2e-78 | bHLH family protein |