PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA2G00098

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

bZIP

Protein Properties

Length: 409aa MW: 44699.8 Da PI: 9.277

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA2G00098	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	42.6	1.3e-13	333	383	5	55
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 +r++r++kNRe+A rsR+RK+a++ eLe ++++L++ Nk+L+ + e+ k+ AA2G00098 333 RRQKRMIKNRESAARSRARKQAYTLELEAEIENLKQLNKELQRKQTEIMKT 383 69*************************************999877776665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.4E-10	329	387	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.427	331	382	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	4.88E-10	333	383	No hit	No description
CDD	cd14707	1.62E-25	333	385	No hit	No description
Pfam	PF00170	6.4E-11	333	383	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	5.1E-13	333	382	No hit	No description
PROSITE pattern	PS00036	0	336	351	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009737	Biological Process	response to abscisic acid
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 409 aa Download sequence Send to blast
MGTHVNFNNS VSDATGGDGS NQRKPMASGL PLARQSSVYT LTFDELQNTL LGGSGRDFGS 60 MNMDELLKNI WTAEETQAVT ASVAVAQPSG YVPGGNLQRQ GSLTLPRTLS QKTVDEVWKN 120 FAPKDSNGNI GSSCGDGSNV PGRQQTLGEM TLEDFLYCAG VVKEDNCSQQ IDENNSGFYA 180 NNGPGLVFGF GQPNQNSISF NGNNNSMILN QSPGLGLKMG ATMHQQQLHQ PQQLQQQQQQ 240 QSHQRLPPTI FPKQSNVTFA APMNMVNKNS YDVGGDGPVN SNNGLSTMGA AGVTVAATSS 300 GTSSAENNTW SPVPYVFGRG RRSNTGLEKV IERRQKRMIK NRESAARSRA RKQAYTLELE 360 AEIENLKQLN KELQRKQTEI MKTQKNEVNM FFLFKRILSS FSFIYITSN

Sequence ? help Back to Top

Protein Sequence Length: 409 aa Download sequence Send to blast

MGTHVNFNNS VSDATGGDGS NQRKPMASGL PLARQSSVYT LTFDELQNTL LGGSGRDFGS  60
MNMDELLKNI WTAEETQAVT ASVAVAQPSG YVPGGNLQRQ GSLTLPRTLS QKTVDEVWKN  120
FAPKDSNGNI GSSCGDGSNV PGRQQTLGEM TLEDFLYCAG VVKEDNCSQQ IDENNSGFYA  180
NNGPGLVFGF GQPNQNSISF NGNNNSMILN QSPGLGLKMG ATMHQQQLHQ PQQLQQQQQQ  240
QSHQRLPPTI FPKQSNVTFA APMNMVNKNS YDVGGDGPVN SNNGLSTMGA AGVTVAATSS  300
GTSSAENNTW SPVPYVFGRG RRSNTGLEKV IERRQKRMIK NRESAARSRA RKQAYTLELE  360
AEIENLKQLN KELQRKQTEI MKTQKNEVNM FFLFKRILSS FSFIYITSN

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the ABA-responsive element (ABRE). Could participate in abscisic acid-regulated gene expression.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00087	SELEX	Transfer from AT1G49720	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA2G00098

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by abscisic acid (ABA) and cold. {ECO:0000269\|PubMed:10636868}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX122892	8e-66	JX122892.1 Brassica napus ABA-responsive element binding factor 1 (ABF1.1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001185183.1	1e-173	abscisic acid responsive element-binding factor 1
Swissprot	Q9M7Q5	1e-172	AI5L4_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 4
TrEMBL	A0A178WIY0	1e-173	A0A178WIY0_ARATH; AtABF1
STRING	AT1G49720.2	1e-173	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM734	27	129

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49720.2	1e-139	abscisic acid responsive element-binding factor 1

Publications ? help Back to Top
Fernando VCD,Al Khateeb W,Belmonte MF,Schroeder DF Role of Arabidopsis ABF1/3/4 during det1 germination in salt and osmotic stress conditions. Plant Mol. Biol., 2018. 97(1-2): p. 149-163 [PMID:29680877]