PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA2G00088
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family G2-like
Protein Properties Length: 321aa    MW: 36211 Da    PI: 8.3232
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA2G00088genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like93.71.5e-29198253156
    G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                k r+ WtpeLH+rF++a+++LGG+ +AtPk+i+e+m+ +gLt+++vkSHLQkYRl+
  AA2G00088 198 KHRRSWTPELHSRFLNALDKLGGPGVATPKQIREHMQEEGLTNDEVKSHLQKYRLH 253
                689***************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.238195255IPR017930Myb domain
SuperFamilySSF466899.86E-17196256IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.0E-25197256IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-25198253IPR006447Myb domain, plants
PfamPF002498.9E-9200251IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MSSFGEELNL GSKLSLNLLS KISNVATKAC NLEEYIKKLE EEKRKINDSK LELELPLSLE  60
IINDAISFLR DEKNKRCLEI KRCLEIDTKP LLKDLNEKLE EDGIDLQIKK KNKNSVSSSF  120
QLWKPNDQSL INTTKPEIEI KKGKSLNGFS MLSPQVTIPK VETSLGLGLS SSSMFNGGRR  180
GITTSSSVAS VSHQGPRKHR RSWTPELHSR FLNALDKLGG PGVATPKQIR EHMQEEGLTN  240
DEVKSHLQKY RLHIRKPCSN QEKQLVNVLG FKLWNSQEEE SAKRRRRNSS ESDSPQGPLQ  300
LTGGDSIEEE EDIEDAKSES F
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phosphate signaling in roots. {ECO:0000250|UniProtKB:Q9FX67}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00193DAPTransfer from AT1G49560Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA2G00088
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013590011.12e-92PREDICTED: uncharacterized protein LOC106298431
SwissprotQ9FX849e-80HHO6_ARATH; Transcription factor HHO6
TrEMBLA0A1J3DV797e-96A0A1J3DV79_NOCCA; Protein PHR1-LIKE 1
STRINGBo6g018370.16e-92(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM139271824
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49560.13e-57G2-like family protein
Publications ? help Back to Top
  1. Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A
    Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis.
    Plant Cell Physiol., 2016. 57(6): p. 1142-52
    [PMID:27016098]