PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | AA2G00045 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 130aa MW: 15041 Da PI: 10.5314 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55 | 2.1e-17 | 86 | 127 | 1 | 46 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaa 46 sgy+GVr+++ +g++ AeIrdp + +kr++lg+f+t e+A++a+ AA2G00045 86 SGYRGVRRRP-WGKYSAEIRDPFD---KKRIWLGTFDTIEGAKEAY 127 89********.**********644...5*****************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF038123 | 9.4E-28 | 2 | 130 | IPR017392 | AP2/ERF transcription factor ERF/PTI6 |
CDD | cd00018 | 5.64E-20 | 86 | 129 | No hit | No description |
Pfam | PF00847 | 1.6E-10 | 86 | 127 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-16 | 86 | 129 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 18.123 | 87 | 130 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.2E-8 | 87 | 130 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.2E-9 | 88 | 99 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.6E-19 | 88 | 129 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.2E-9 | 110 | 126 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 130 aa Download sequence Send to blast |
MQNVVKGDKH KTRIDLSKIK RIRVTCTDPY ATEPSSDDES NSPAKNRRSL IAEINVEKLL 60 EKSEKKESNR EITVKLDVNK SRKSASGYRG VRRRPWGKYS AEIRDPFDKK RIWLGTFDTI 120 EGAKEAYNRN |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | AA2G00045 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010551151.1 | 7e-26 | PREDICTED: ethylene-responsive transcription factor ERF117 | ||||
Swissprot | Q9M9B2 | 2e-17 | EF117_ARATH; Ethylene-responsive transcription factor ERF117 | ||||
STRING | Bostr.26675s0265.1.p | 4e-27 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G49120.1 | 4e-19 | ERF family protein |