PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA29G00228 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | LBD | ||||||||
Protein Properties | Length: 207aa MW: 22614.6 Da PI: 8.5893 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 134.1 | 5.4e-42 | 20 | 119 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrr+Ca++C+++pyf ++p+kfa vhk+FGasnv+k+l ++pe++r da++slvyeA++r+rdPvyG++g i++lqqq++ l+ael ++++ AA29G00228 20 PCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVPESQRADAANSLVYEANVRLRDPVYGCMGAISTLQQQVQALQAELTAVRS 118 7**********************************************************************************************9998 PP DUF260 100 e 100 e AA29G00228 119 E 119 7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.945 | 19 | 120 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.5E-42 | 20 | 117 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
MAGFRRPMLG PPGTLNTITP CAACKLLRRR CAQECPFSPY FSPHEPHKFA SVHKVFGASN 60 VSKMLMEVPE SQRADAANSL VYEANVRLRD PVYGCMGAIS TLQQQVQALQ AELTAVRSEI 120 LKYKQREAVA ANTLINIPSN SHQISSFLSS GAVSVITPQP QTPSTPPQPP VTHQHPPPPS 180 SSSCVYSQQT SRGLQYSDIE SENNSYF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 6e-45 | 12 | 139 | 3 | 124 | LOB family transfactor Ramosa2.1 |
5ly0_B | 6e-45 | 12 | 139 | 3 | 124 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA29G00228 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009141907.1 | 1e-105 | PREDICTED: LOB domain-containing protein 15 isoform X2 | ||||
Swissprot | Q8L5T5 | 5e-97 | LBD15_ARATH; LOB domain-containing protein 15 | ||||
TrEMBL | A0A087H476 | 1e-112 | A0A087H476_ARAAL; Uncharacterized protein | ||||
STRING | A0A087H476 | 1e-113 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1927 | 27 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40470.1 | 1e-85 | LOB domain-containing protein 15 |
Publications ? help Back to Top | |||
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