PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA29G00157
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family GeBP
Protein Properties Length: 321aa    MW: 36163.2 Da    PI: 6.0344
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA29G00157genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57399.53.1e-3186179397
      DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 
                 ++r+w++eDei++L+G+ d++++ g+ + +d+d f++++k+ i+ k+sk+ql++K r+LKk+f+++ k  + gkep f+++ d+++f ls+++Wg
  AA29G00157  86 SKRVWNKEDEIAILKGIADYQNEAGVIYNSDTDSFFNYMKNVIHTKFSKDQLMSKTRKLKKRFQDNLKV-NAGKEPCFANSFDSECFALSNILWG 179
                 79*****************************************************************99.************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045049.6E-2587179IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MVSKKRFHYE DDSSFSESDS DSSGGETELN GKATLTSSPK PAVTLTKKSP LKSDSKHATS  60
EAGEGTPSRL RRRKKKQISS YFSNDSKRVW NKEDEIAILK GIADYQNEAG VIYNSDTDSF  120
FNYMKNVIHT KFSKDQLMSK TRKLKKRFQD NLKVNAGKEP CFANSFDSEC FALSNILWGN  180
HDEVEGADMD IDKDKAKESR NRSSRNDGPV EEDSTENLPS DNADTEAEKI MENGTCGKKK  240
EEDDGADELR ALQDALETTM FLHLGDYPKR LLLQNLKTLG AKERKKLSDE WNSLVVQEMV  300
LKSKKQAFSA KLAVHEDAFD Q
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA29G00157
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGBostr.22252s0256.1.p7e-59(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1743558
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00270.19e-42DNA-binding storekeeper protein-related transcriptional regulator