PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA29G00151
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family CO-like
Protein Properties Length: 390aa    MW: 42595.9 Da    PI: 4.9031
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA29G00151genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.52e-06444539
    zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                +C+ ++e++   +C+++  +lC +C  + H+       H++
  AA29G00151  4 MCDFCGEQRSMVYCRSDAACLCLSCDRSVHSAnalskrHSR 44
                6*****************************65677777765 PP
2zf-B_box25.33.2e-084690441
    zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvp 41
                 +C++++ ++++  C++ ++ lC++C  ++H +       H++++
  AA29G00151 46 LVCERCNAQPASVRCTEERVSLCQNCDWSGHGSsnpsstqHKRQN 90
                68*****************************44888999998776 PP
3CCT60.74.7e-21333376144
         CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                 R++a++RYkeK+k RkF+K++rYesRKa+A+ R RvKGrFvk+ 
  AA29G00151 333 RNNAVMRYKEKKKARKFDKRVRYESRKARADVRRRVKGRFVKAG 376
                 99***************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.798147IPR000315B-box-type zinc finger
CDDcd000212.08E-8447No hitNo description
SMARTSM003361.1E-8447IPR000315B-box-type zinc finger
PROSITE profilePS501199.5564391IPR000315B-box-type zinc finger
CDDcd000215.30E-64776No hitNo description
SMARTSM003360.924891IPR000315B-box-type zinc finger
PROSITE profilePS5101715.319333375IPR010402CCT domain
PfamPF062035.9E-16333375IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MGYMCDFCGE QRSMVYCRSD AACLCLSCDR SVHSANALSK RHSRTLVCER CNAQPASVRC  60
TEERVSLCQN CDWSGHGSSN PSSTQHKRQN ISCYSGCPSS SELASIWSFC LDLAAVAGES  120
VCEQEMGMMN IDDGQSQKEI SADQNGDEDQ KDVTVGSSSR PETSSAVQGM DQSSVPGNSA  180
FAKGFVLDLK EDLGVCEDDF YGNLGMDEVD LALENYEELF GVAFNPSEEL FEHGGIDSLF  240
QKHQTAPEGS MNANQPANSN AASADSFMSS KTEPIICFTS KPAHSNISFS GVTGESSAGD  300
FQECGASSMQ ISGEPPWYPP TSQDNATSHS ANRNNAVMRY KEKKKARKFD KRVRYESRKA  360
RADVRRRVKG RFVKAGEAYD YDPLSPARSY
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA29G00151
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010486334.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9-like
SwissprotQ9SSE50.0COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLV4LFJ10.0V4LFJ1_EUTSA; Uncharacterized protein
STRINGXP_010486334.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16822786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07650.40.0CONSTANS-like 9