PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA29G00066
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family GATA
Protein Properties Length: 125aa    MW: 13935 Da    PI: 11.0062
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA29G00066genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.11.1e-183468135
        GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                C+nCgt kTplWR gp g+k+LCnaCG+++rk+++
  AA29G00066 34 CTNCGTNKTPLWRGGPAGPKSLCNACGIKNRKRRR 68
                ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011413.5342883IPR000679Zinc finger, GATA-type
SMARTSM004011.0E-122880IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.14E-133084No hitNo description
Gene3DG3DSA:3.30.50.105.9E-153083IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.83E-143386No hitNo description
PfamPF003202.1E-163468IPR000679Zinc finger, GATA-type
PROSITE patternPS0034403459IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 125 aa     Download sequence    Send to blast
MKRKLTALEA IEDRSSSSSK RSINGGIINE KKSCTNCGTN KTPLWRGGPA GPKSLCNACG  60
IKNRKRRRTV NIGSEDKKKK KTRNQKLSEF LRSSMGENQW RRKLGEEEQA AILLMALSYA  120
SSVYA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16367RKRRR
26368RKRRRT
36580RRRTVNIGSEDKKKKK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA29G00066
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020888043.13e-44GATA transcription factor 15
SwissprotQ8LG105e-45GAT15_ARATH; GATA transcription factor 15
TrEMBLA0A1J3ELK93e-45A0A1J3ELK9_NOCCA; GATA transcription factor 15
STRINGAT3G06740.12e-43(Arabidopsis thaliana)
STRINGfgenesh2_kg.3__690__AT3G06740.12e-43(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50502652
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.19e-47GATA transcription factor 15
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  3. Ranftl QL,Bastakis E,Klermund C,Schwechheimer C
    LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2295-311
    [PMID:26829982]