PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA27G00186
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family ARF
Protein Properties Length: 925aa    MW: 102888 Da    PI: 6.3312
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA27G00186genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.42.8e-23198299199
                 EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                 f+k+lt sd++++g +++p++ ae+       +++++ + +l+ +d++  +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++++ +l+
  AA27G00186 198 FCKTLTASDTSTHGGFSVPRRAAEKVfppldySLQPPAQ-ELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVIFI--RNEKNQLF 293
                 99***********************9*****97777664.9************************************************..5688889* PP

                 EEEE-S CS
          B3  94 vkvfrk 99 
                 ++++r+
  AA27G00186 294 LGIRRA 299
                 **9997 PP
2Auxin_resp111.39.5e-37324407183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aahaa+t+s F+v+++Pras+seFv++++k+ ka+  +++svGmRf+m fete+ss rr++Gt++g+sdld+vrW+nS+Wrs+k
  AA27G00186 324 AAHAAATNSCFTVFFHPRASPSEFVIPLSKYIKAVFhTRISVGMRFRMLFETEESSVRRYMGTITGISDLDTVRWSNSHWRSVK 407
                 79*******************************986599******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.02E-48184327IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.5E-40191313IPR015300DNA-binding pseudobarrel domain
CDDcd100174.64E-21197293No hitNo description
PROSITE profilePS5086312.337198300IPR003340B3 DNA binding domain
SMARTSM010192.3E-23198300IPR003340B3 DNA binding domain
PfamPF023624.0E-21198299IPR003340B3 DNA binding domain
PfamPF065073.8E-32324407IPR010525Auxin response factor
PROSITE profilePS5174518.934819903IPR000270PB1 domain
PfamPF023096.4E-5830904IPR033389AUX/IAA domain
SuperFamilySSF542775.1E-6835893No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 925 aa     Download sequence    Send to blast
MEKDEFVLPE LKSYSCCSSW KKTWFLLSDM KLSTSGLGQQ GHEGFSSSLF VFIFSPFSLI  60
PIWTLVSSIV VQSYSPKFLH SCMFLTGEKC LNSELWHACA GPLVSLPSSG SRVVYFPQGH  120
SEQVAATTNK EVDGHIPNYP SLPPQLICQL HNVTMHADVE TDEVYAQMTL QPLTPEEQKE  180
TFVPIELGIP SKQPSNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDYS LQPPAQELIA  240
RDLHDVEWKF RHIFRGQPKR HLLTTGWSVF VSAKRLVAGD SVIFIRNEKN QLFLGIRRAT  300
RPQTIVPSSV LSSDSMHIGL LAAAAHAAAT NSCFTVFFHP RASPSEFVIP LSKYIKAVFH  360
TRISVGMRFR MLFETEESSV RRYMGTITGI SDLDTVRWSN SHWRSVKDYD GLFRCNSSNN  420
EDDLDITGLG ERQPRVSLWE IEPLTTFPMY PSLFPLRLKR PWHAGPSSLN DGRGDLASGL  480
TWLRGGGGEQ GLLPLNYPSV GLFPWMQQRL DLSQLGPDQN QQYQAMLAAG LQNMGGGDPL  540
RQQFVQMQEP QHHYLQQSAG HNSDLLLQQQ QQASQQLLPR HLLQAQTQMM SEHHPQQSMR  600
QEVSNQPTGQ PQQPDHAYLN AYKMQNGHLQ QWQQSDMPSP SYMKPDFADS NNKFATTVSL  660
MQQNSASPGS GDGSNLLNFS ITGQSVTPEQ LTTEAWSPKH GHPASNSFSE PLSLPQVYAG  720
KSLALEPGNT NLNPQNSSLF GVDHDSGLFL PSTVPRFGSS GDADASSMSL TDSGFQNSLY  780
GCMQDTHELL HGAGQINPSA QTKNFVKVWV LGLFSIPLLC SSSVYKSGSV GRSLDISRFS  840
SYHELREELG KMFAIEGLLE DPLRSGWQLV FVDKENDILL LGDDPWESFV NNVWYIKILS  900
PEDVQQMGEH GEGSGGSFSQ NPTHL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1488644246388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Regulates both stamen and gynoecium maturation. Promotes jasmonic acid production. Partially redundant with ARF6. Involved in fruit initiation. Acts as an inhibitor to stop further carpel development in the absence of fertilization and the generation of signals required to initiate fruit and seed development. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16107481, ECO:0000269|PubMed:16829592}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00033PBMTransfer from AT5G37020Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA27G00186
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR167. {ECO:0000269|PubMed:17021043}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0421960.0AF042196.1 Arabidopsis thaliana auxin response factor 8 (ARF8) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010450468.10.0PREDICTED: auxin response factor 8 isoform X2
SwissprotQ9FGV10.0ARFH_ARATH; Auxin response factor 8
TrEMBLR0GF160.0R0GF16_9BRAS; Auxin response factor
STRINGXP_010450468.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13442894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37020.10.0auxin response factor 8
Publications ? help Back to Top
  1. Liu N, et al.
    Down-regulation of AUXIN RESPONSE FACTORS 6 and 8 by microRNA 167 leads to floral development defects and female sterility in tomato.
    J. Exp. Bot., 2014. 65(9): p. 2507-20
    [PMID:24723401]
  2. Minato N, et al.
    The phytoplasmal virulence factor TENGU causes plant sterility by downregulating of the jasmonic acid and auxin pathways.
    Sci Rep, 2014. 4: p. 7399
    [PMID:25492247]
  3. Ortega-Amaro MA, et al.
    Overexpression of AtGRDP2, a novel glycine-rich domain protein, accelerates plant growth and improves stress tolerance.
    Front Plant Sci, 2014. 5: p. 782
    [PMID:25653657]
  4. Wang Y, et al.
    MicroRNA167-Directed Regulation of the Auxin Response Factors GmARF8a and GmARF8b Is Required for Soybean Nodulation and Lateral Root Development.
    Plant Physiol., 2015. 168(3): p. 984-99
    [PMID:25941314]
  5. Barik S, et al.
    Coevolution Pattern and Functional Conservation or Divergence of miR167s and their targets across Diverse Plant Species.
    Sci Rep, 2015. 5: p. 14611
    [PMID:26459056]
  6. Pashkovskiy PP,Kartashov AV,Zlobin IE,Pogosyan SI,Kuznetsov VV
    Blue light alters miR167 expression and microRNA-targeted auxin response factor genes in Arabidopsis thaliana plants.
    Plant Physiol. Biochem., 2016. 104: p. 146-54
    [PMID:27031426]
  7. Mlotshwa S,Pruss GJ,MacArthur JL,Reed JW,Vance V
    Developmental Defects Mediated by the P1/HC-Pro Potyviral Silencing Suppressor Are Not Due to Misregulation of AUXIN RESPONSE FACTOR 8.
    Plant Physiol., 2016. 172(3): p. 1853-1861
    [PMID:27688620]
  8. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  9. Zhang GZ, et al.
    Ectopic expression of UGT84A2 delayed flowering by indole-3-butyric acid-mediated transcriptional repression of ARF6 and ARF8 genes in Arabidopsis.
    Plant Cell Rep., 2017. 36(12): p. 1995-2006
    [PMID:29027578]
  10. Zheng K, et al.
    Involvement of PACLOBUTRAZOL RESISTANCE6/KIDARI, an Atypical bHLH Transcription Factor, in Auxin Responses in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 1813
    [PMID:29114256]
  11. Liu Z, et al.
    ARF2-ARF4 and ARF5 are Essential for Female and Male Gametophyte Development in Arabidopsis.
    Plant Cell Physiol., 2018. 59(1): p. 179-189
    [PMID:29145642]
  12. Ghelli R, et al.
    A Newly Identified Flower-Specific Splice Variant of AUXIN RESPONSE FACTOR8 Regulates Stamen Elongation and Endothecium Lignification in Arabidopsis.
    Plant Cell, 2018. 30(3): p. 620-637
    [PMID:29514943]