PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA26G00818
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family C3H
Protein Properties Length: 407aa    MW: 47276.6 Da    PI: 9.3956
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA26G00818genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.72e-08731126
                --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                ykt+lC  f+++G+C++ ++C+FaHg
  AA26G00818  7 YKTKLCIMFSKNGQCSR-PNCSFAHG 31
                9****************.*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902292.75E-6436IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-11538IPR000571Zinc finger, CCCH-type
SMARTSM003560.0058632IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.183633IPR000571Zinc finger, CCCH-type
PfamPF006424.7E-6731IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MSGFSMYKTK LCIMFSKNGQ CSRPNCSFAH GNAELRRPGE SSFTGRHPNM DNDLRDKIGR  60
RLSLERRPSS DRGGPSSDRS GRRLPRFSGH DNSRPFEKRM DKDYRETYKF DERSDYAGGL  120
KVGNRAEDRV EDERKKFPSY NGATEDQAIV KTRVQFNQPV IQAFLWGFTC VQLKDIELDI  180
KMLSEDKLRL EASFERKAQE VDILSSRIKE LETQLDRERE ECRRRILDLS SFRDEFWSLL  240
LCVSVTSNMK KFVKEYNRYL RAQDDVKRSQ ARLQKLGSQI TMYLVGNDDN DRDADIDIMS  300
DEENNARNLR PPPNEFQNTS FLSRKRHHVD QYTNKVASED AMIGRGEGDK LDAGKKHSRW  360
NRVSSKSYSE EEGGGWNDDT ISNHPSSRDD KWKRRRFSSG NPATDKV
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA26G00818
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020887137.11e-155zinc finger CCCH domain-containing protein 40 isoform X1
SwissprotQ93XW71e-151C3H40_ARATH; Zinc finger CCCH domain-containing protein 40
TrEMBLV4LYT81e-151V4LYT8_EUTSA; Uncharacterized protein
STRINGXP_006406234.11e-152(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM100692127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21810.11e-134C3H family protein