PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA26G00620
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family HB-PHD
Protein Properties Length: 752aa    MW: 83498.9 Da    PI: 4.4403
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA26G00620genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox49.19.8e-16644689853
                 -HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
    Homeobox   8 tkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                 t+  +++L + F++nryp+++++e+LAk+l++t +q+++WF+NrR 
  AA26G00620 644 TDAKTQILFKSFQENRYPDRSTKEKLAKELEMTVTQITNWFKNRRS 689
                 67889****************************************7 PP
2PHD40.65.7e-14300355151
                 SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
         PHD   1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                 +C+ Cg+    ++++++lCdg C++ fH++C++++l++e++p +   wlC+ C++k
  AA26G00620 300 FCAKCGSedLSADNDIILCDGfCDRGFHQYCIQPPLRKEDIPPDdeAWLCPGCECK 355
                 699***977677********88*******************99999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5001611.27298355IPR019787Zinc finger, PHD-finger
SuperFamilySSF579032.06E-13299356IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.105.5E-13299355IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd155044.82E-27300352No hitNo description
PfamPF006281.3E-11300355IPR019787Zinc finger, PHD-finger
SMARTSM002497.3E-10300353IPR001965Zinc finger, PHD-type
PROSITE patternPS013590301352IPR019786Zinc finger, PHD-type, conserved site
SMARTSM003891.2E-12636698IPR001356Homeobox domain
SuperFamilySSF466891.15E-14642690IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.3E-15643691IPR009057Homeodomain-like
PfamPF000464.3E-13644689IPR001356Homeobox domain
PROSITE profilePS5007113.734644694IPR001356Homeobox domain
CDDcd000864.55E-14644688No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 752 aa     Download sequence    Send to blast
MPRAGKRRTR RSASGVEQIN GAYGEVQVPV TTPTANKNLQ VSSKDETRNV ENIEPPLQDR  60
NEDQSGKDTS LHHICRDLDS EMKEVGNEVF NGVPGEEQKQ TPETGKKSSC TKLSGSHREL  120
VMGLPCDGQF QVHKSRMSAK SSKKVGGGGE RKVLFSIHKR VVKPEEAASS VNAKTTPVDG  180
PSKEKRGRKK EKIGEDDEYT RIKKKLRYLL NRINYEQSLI NAYSSDGWKG LSLEKLRPEK  240
ELERATKEIL RRKVKIRDLF QHLDTLCAEG SLPVSLFDSD GEISSEDVRE TILQLMFTIF  300
CAKCGSEDLS ADNDIILCDG FCDRGFHQYC IQPPLRKEDI PPDDEAWLCP GCECKDDSLE  360
LLNDSLGTKF LISHTWEKIF PEAAAAMAGG DQNLNVDLPS DDSDDDEYDP DGLDTNENND  420
DQSDGSEESE NEDGSSDESD FTSASDEMVG TSKQGQDLDS SDDSEDDDYD PDAPTLDEDK  480
IQESSSSDFT SDSEDLEASL KSAEPNQQNE GTQLRDPGEK EPQLPDDATS ESDTGLDGPD  540
DAPRRRNVER LDYKKLYDEE YENVPSSSSD DEDWDKIAGE TDSISADEGD TVPPKQSSKA  600
EKQTSTRKPR KKSKSADEQD TVKASQQVAN ENGSLGGSSA YKQTDAKTQI LFKSFQENRY  660
PDRSTKEKLA KELEMTVTQI TNWFKNRRSS TSKPLVKLVS MEDVEKLTTG KDGNETSVAG  720
SSKRNPENES VAENNSKAPE SADTGSRKRR RR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1200206RIKKKLR
2746750RKRRR
Functional Description ? help Back to Top
Source Description
UniProtBinds only to large DNA fragments. Recognizes a DNA fragment carrying 8 copies of box7 motif of the light-induced cab-E promoter of Nicotiana plumbaginifolia. Also recognizes the box7m1 motif.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA26G00620
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1171051e-90AK117105.1 Arabidopsis thaliana At3g19510 mRNA for putative homeobox protein HAT3.1, complete cds, clone: RAFL16-64-G01.
GenBankBT0059651e-90BT005965.1 Arabidopsis thaliana At3g19510 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023641273.10.0homeobox protein HAT3.1
SwissprotQ049960.0HAT31_ARATH; Homeobox protein HAT3.1
TrEMBLA0A3P5ZFP40.0A0A3P5ZFP4_BRACM; Uncharacterized protein
STRINGBostr.19424s0710.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72702543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.10.0Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain
Publications ? help Back to Top
  1. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]