PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA26G00577
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family B3
Protein Properties Length: 798aa    MW: 90499.2 Da    PI: 9.297
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA26G00577genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.11.3e-17596198
                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
          B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                ff +l+ s++ +++rl++p kf+++++ +   s+ + l+ ++g +W+v l  rk ++++++ +GW+eFv+   ++ g  ++F+++g+s f  +v +f+
  AA26G00577  5 FFHKLIFSSAIQEKRLRIPDKFVSRFKDE--LSVAVALTVPDGHVWRVGL--RKADNKIWFHDGWQEFVDRYCIRIGYLLIFRYEGNSAF--TVYIFN 96
                899999*****************999755..99*****************..**********************************9999..888875 PP
2B348.22e-15244328190
                 EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                 f  vl ps+  + ++++lp  fae++ +g+  + ++++   +  ++W v++    k gr  +++GW eF  +n+L egD++vF+l ++++f
  AA26G00577 244 FRVVLRPSYLYRGCIMYLPSGFAEKYlSGI-SGFIKIQ---LAEKQWPVRC--LYKAGRAKFSQGWYEFTLENNLGEGDVCVFELLRTRDF 328
                 677899********************8444.3555666...566*******..666666779**********************9988777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.8E-22398IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.1E-21397IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.367598IPR003340B3 DNA binding domain
CDDcd100176.35E-19596No hitNo description
SMARTSM010192.1E-17598IPR003340B3 DNA binding domain
PfamPF023621.1E-14596IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.3E-21236328IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-20239330IPR015300DNA-binding pseudobarrel domain
CDDcd100172.18E-17242325No hitNo description
PROSITE profilePS5086311.998244336IPR003340B3 DNA binding domain
SMARTSM010191.0E-17244336IPR003340B3 DNA binding domain
PfamPF023629.2E-14244329IPR003340B3 DNA binding domain
PROSITE profilePS513756.971478508IPR002885Pentatricopeptide repeat
PfamPF015350.0072483507IPR002885Pentatricopeptide repeat
PROSITE profilePS513759.328509548IPR002885Pentatricopeptide repeat
PfamPF015350.095511523IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.084549583IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.982586616IPR002885Pentatricopeptide repeat
PfamPF130413.3E-8616663IPR002885Pentatricopeptide repeat
PROSITE profilePS513759.876617651IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007560.0014620653IPR002885Pentatricopeptide repeat
PROSITE profilePS513759.164652682IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007560.0016654687IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.821688718IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.697757791IPR002885Pentatricopeptide repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0080156Biological Processmitochondrial mRNA modification
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 798 aa     Download sequence    Send to blast
MPRPFFHKLI FSSAIQEKRL RIPDKFVSRF KDELSVAVAL TVPDGHVWRV GLRKADNKIW  60
FHDGWQEFVD RYCIRIGYLL IFRYEGNSAF TVYIFNLSQS EINYHSSNLI NNMDSSSNHH  120
FNKRPRLFED LEDEDAEVVY PLSIIPVSDS NKGFANSAIQ SLFIGSKGEE STPNNPKVLK  180
KRGRKKKNAV PEEMNSSSVQ GYDDPENRSK FYESASARKR TVTAEERERA INAAKTFEPT  240
NPFFRVVLRP SYLYRGCIMY LPSGFAEKYL SGISGFIKIQ LAEKQWPVRC LYKAGRAKFS  300
QGWYEFTLEN NLGEGDVCVF ELLRTRDFVL KEQMSSVLAG SRFLTLLHQN QKTLIQTKQI  360
HAQLVTNGCR DNSLYGKLLG HYCSSTTWES LKLAKLLVFP RFDHPDKFLF NTLLKCSKPE  420
DSIRIFAKWA TKNALLLHER TFIFVFGACA RSASSGSVLW FGRQVHGMVM KHGFFYQSEL  480
IGTTLIHFYS KNGDLFSARK AFDEMPNRTS VTWNAMIGGY CSQKDKGNHY ARTALTLFQT  540
LNDNGVKPTD TTMVCILSAI SQTGLLELGS LIHGYIHKLG FTPEIDVFIG TALVDMYSKC  600
GCLNSAFSVF NLMTVKNVLT WTSMATGLAL NGKGHETPNL LHQMAKSGIK PNEVTFTSLL  660
SAYRHIGLVQ EGLELFQTMK TRFGITPVIQ HYGCIVDLLS KAGRLQEAYD FILAMPIKPD  720
AILLRNLCNA CSIHGETTMG EEIGKVLLKK WSDSVVECED YIALSNLLAS KGKWVEVELL  780
RDEMKDRRIK TRPGYSLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A5e-8220733112136B3 domain-containing transcription factor VRN1
4i1k_B5e-8220733112136B3 domain-containing transcription factor VRN1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA26G00577
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006406547.10.0pentatricopeptide repeat-containing protein At3g18970
RefseqXP_010487825.10.0PREDICTED: pentatricopeptide repeat-containing protein At3g18970
SwissprotQ9LJ690.0PP243_ARATH; Pentatricopeptide repeat-containing protein At3g18970
TrEMBLV4LC700.0V4LC70_EUTSA; Uncharacterized protein
STRINGXP_006406547.10.0(Eutrema salsugineum)
STRINGXP_010487825.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1281033
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.10.0B3 family protein
Publications ? help Back to Top
  1. Lurin C, et al.
    Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins reveals their essential role in organelle biogenesis.
    Plant Cell, 2004. 16(8): p. 2089-103
    [PMID:15269332]
  2. Takenaka M,Verbitskiy D,Zehrmann A,Brennicke A
    Reverse genetic screening identifies five E-class PPR proteins involved in RNA editing in mitochondria of Arabidopsis thaliana.
    J. Biol. Chem., 2010. 285(35): p. 27122-9
    [PMID:20566637]
  3. Liu JM, et al.
    The E-Subgroup Pentatricopeptide Repeat Protein Family in Arabidopsis thaliana and Confirmation of the Responsiveness PPR96 to Abiotic Stresses.
    Front Plant Sci, 2016. 7: p. 1825
    [PMID:27994613]