PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA26G00510
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family NAC
Protein Properties Length: 311aa    MW: 36109.2 Da    PI: 6.789
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA26G00510genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM180.25.3e-5651311129
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 
                 lppGfrFhPtdeel+++yL++kv++ +++  ++i +vd++k+ePwdLp+k++ +ekewyfF  rd+ky+tg r+nrat++gyWk+tgkdke+++ +g l
  AA26G00510   5 LPPGFRFHPTDEELITHYLCRKVSDIDFTS-KAIVDVDLNKCEPWDLPAKASMGEKEWYFFNLRDRKYPTGLRTNRATEAGYWKTTGKDKEIYR-TGVL 101
                 79*************************999.88***************999999****************************************.99** PP

         NAM 100 vglkktLvfykgrapkgektdWvmheyrle 129
                 vg+kktLvfykgrapkgek++Wvmheyrle
  AA26G00510 102 VGMKKTLVFYKGRAPKGEKSNWVMHEYRLE 131
                 ****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-643151IPR003441NAC domain
PROSITE profilePS5100560.0895151IPR003441NAC domain
PfamPF023659.0E-296130IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MEENLPPGFR FHPTDEELIT HYLCRKVSDI DFTSKAIVDV DLNKCEPWDL PAKASMGEKE  60
WYFFNLRDRK YPTGLRTNRA TEAGYWKTTG KDKEIYRTGV LVGMKKTLVF YKGRAPKGEK  120
SNWVMHEYRL ENKHPFKPTK EEWVVCRVFE KNIATKRTQE QEQQQPQTSQ QSFESPCDAN  180
SLMANEFGDI ELPNLNSNID YNNHHIHQYS QASDHVYSEN NNNNNNHCNS TNMNMNLQSW  240
TTNLLGPSLS PINSLLLKAF QIRNSYINPS LLQQVLSNLQ NGSTSSQQQS QTQTQLQTQT  300
QEQPFNMDSL W
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-59415716171NO APICAL MERISTEM PROTEIN
1ut4_B5e-59415716171NO APICAL MERISTEM PROTEIN
1ut7_A5e-59415716171NO APICAL MERISTEM PROTEIN
1ut7_B5e-59415716171NO APICAL MERISTEM PROTEIN
4dul_A5e-59415716171NAC domain-containing protein 19
4dul_B5e-59415716171NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00364DAPTransfer from AT3G18400Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA26G00510
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022576079.11e-163NAC domain-containing protein 100
TrEMBLA0A1J3GF001e-163A0A1J3GF00_NOCCA; Uncharacterized protein
STRINGBra022319.1-P1e-162(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55272649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18400.11e-142NAC domain containing protein 58