PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA26G00370 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | ERF | ||||||||
Protein Properties | Length: 243aa MW: 27505.8 Da PI: 5.251 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.7 | 1.6e-19 | 79 | 128 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r ++ +g+W+AeIrdp++ r++lg+f taeeAa a++ a+k+++g AA26G00370 79 VYRGIRKRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAAMAYDVAAKQIRG 128 69*******.**********954...4************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 6.9E-32 | 79 | 136 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.82E-23 | 79 | 137 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.3E-13 | 79 | 128 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.171 | 79 | 136 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.4E-37 | 79 | 142 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-11 | 80 | 91 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.07E-32 | 80 | 136 | No hit | No description |
PRINTS | PR00367 | 1.6E-11 | 102 | 118 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008219 | Biological Process | cell death | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0010286 | Biological Process | heat acclimation | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0051707 | Biological Process | response to other organism | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MCGGAIISDF APLVTKAKGR KLTAEELWSE LDASAGDDFW SFDSTSKSHF NNQVSVKEEA 60 VEKKEAVKKT ERRRTRKNVY RGIRKRPWGK WAAEIRDPRK GVRVWLGTFN TAEEAAMAYD 120 VAAKQIRGDK AKLNFPFHQN RRPPPKPPQQ YTDQSPENKL SDFSPSEISQ LNFPVDCVGF 180 GNGNEFRTPI CVYEPDDYDL KQQISSLESF LELDGTTVEQ PSQLGESVSE VDLWMLDDVI 240 AQP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-22 | 80 | 140 | 6 | 67 | ATERF1 |
3gcc_A | 1e-22 | 80 | 140 | 6 | 67 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 72 | 86 | RRTRKNVYRGIRKRP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:9159183}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00109 | PBM | Transfer from AT3G16770 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA26G00370 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By 1-aminocyclopropane-1-carboxylic acid (ACC, ethylene precursor), methyl jasmonate (MeJA), and Botrytis cinerea. Also induced by cadmium. {ECO:0000269|PubMed:18836139, ECO:0000269|PubMed:9159183}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_188299.1 | 1e-120 | ethylene-responsive element binding protein | ||||
Swissprot | P42736 | 1e-121 | RAP23_ARATH; Ethylene-responsive transcription factor RAP2-3 | ||||
TrEMBL | A0A178VEQ3 | 1e-119 | A0A178VEQ3_ARATH; RAP2.3 | ||||
TrEMBL | O23143 | 1e-119 | O23143_ARATH; Putative Ckc2 | ||||
STRING | AT3G16770.1 | 1e-119 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16770.1 | 1e-103 | ethylene-responsive element binding protein |