PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA26G00120
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family GRAS
Protein Properties Length: 521aa    MW: 58308.6 Da    PI: 4.636
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA26G00120genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS252.31.8e-771465212374
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl...fsevsPilkfshlt 97 
                 ++lL  cA a+ +g+ +++q++L+ lselas++gd++ Rlaa+ ++AL +++++     ++a p  + ++ +++   +   +   f+evsP++ f + +
  AA26G00120 146 EQLLNPCAMAIMAGNSSRVQHYLCVLSELASSSGDTNYRLAAFGLRALTQHISS----SVSAWPIVTFASAEVKMFQQ---TlmkFYEVSPWFAFPNNM 237
                 689**************************************************9....45566777777444444444...3455************** PP

        GRAS  98 aNqaIleavege....ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg.........skeeleetgerLakfAeelgvpfefnvlv 182
                 aN+aIl+ +++e    + +Hi+D+++s+G+QWp+Ll+aL++Rp ++pp+++iT++++ + +         +   + ++ ++L +fA++l++++++++l 
  AA26G00120 238 ANSAILQILAQEprgnNDLHILDIGVSHGMQWPTLLEALSCRPeGPPPRVQITVLSDTRGSditaeipfsDGPPTYNYSSQLLSFARSLNINLQISILD 336
                 *********9998887899************************55667*********765589999*9999999***********************86 PP

        GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse...sFlerflealeyysalfdsleaklpre 278
                    l++ +++ +++ p+E+l+V+ +++lh+l    +s ++er+e L++++sl +k v+++e++a+++s+   +F+++f+ +ley ++++ds+++++   
  AA26G00120 337 KFPLHSASFQLIDTLPHETLIVCTQFRLHQLK---HSNPDERSEALNALRSLGAKGVILCENNAECSSGscrDFATGFSTKLEYLWKFLDSTSSGF--- 429
                 66*****************************9...66666677********************9997765669*******************9997... PP

        GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  +e+ + Er+l+++e+++++ + g++    +e + kW +r+++aGF +  ++e+a +  k llrk++ +++ r+e+ +  + l Wk++++ ++S W+
  AA26G00120 430 -KEDDSEERKLMEEEATKALLNGGEM----NEGKDKWYDRMRKAGFVAEVFGEDAIDGGKGLLRKYDnNWEIRMEDGDTFAGLLWKGEAVSFCSLWK 521
                 .77777888999999*********99....9************************************666666666666666**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098538.241119500IPR005202Transcription factor GRAS
PfamPF035146.2E-75146521IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042446Biological Processhormone biosynthetic process
GO:2000032Biological Processregulation of secondary shoot formation
Sequence ? help Back to Top
Protein Sequence    Length: 521 aa     Download sequence    Send to blast
MMLGESEPPI QTLDHVLGWL EDSVSLTPLP AFDDSYLVNE FEGCQSWEWD QIQDPGHDLI  60
QDYNQDFIVN NAYVGCGDTD LELLTWDPVV DHAPEVLQPN DQPRKRNAEA VVEAVQVKRT  120
ARSRRKANKS TGKSCKNGNK EERWAEQLLN PCAMAIMAGN SSRVQHYLCV LSELASSSGD  180
TNYRLAAFGL RALTQHISSS VSAWPIVTFA SAEVKMFQQT LMKFYEVSPW FAFPNNMANS  240
AILQILAQEP RGNNDLHILD IGVSHGMQWP TLLEALSCRP EGPPPRVQIT VLSDTRGSDI  300
TAEIPFSDGP PTYNYSSQLL SFARSLNINL QISILDKFPL HSASFQLIDT LPHETLIVCT  360
QFRLHQLKHS NPDERSEALN ALRSLGAKGV ILCENNAECS SGSCRDFATG FSTKLEYLWK  420
FLDSTSSGFK EDDSEERKLM EEEATKALLN GGEMNEGKDK WYDRMRKAGF VAEVFGEDAI  480
DGGKGLLRKY DNNWEIRMED GDTFAGLLWK GEAVSFCSLW K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B4e-3114352185473Protein SHORT-ROOT
5b3h_B2e-3114352131419Protein SHORT-ROOT
5b3h_E2e-3114352131419Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA26G00120
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002884991.10.0scarecrow-like protein 29
SwissprotQ9LRW30.0SCL29_ARATH; Scarecrow-like protein 29
TrEMBLD7L2900.0D7L290_ARALL; Scarecrow transcription factor family protein
STRINGfgenesh2_kg.3__1487__AT3G13840.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM107472834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.10.0GRAS family protein