PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA26G00113
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family GRF
Protein Properties Length: 364aa    MW: 41373.1 Da    PI: 8.5738
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA26G00113genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC75.55.8e-2481124144
         WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                 d+epgrCrRtDGKkWRCsr++++++k+CE+H+hrgr+r rks +
  AA26G00113  81 DPEPGRCRRTDGKKWRCSREAYPDSKYCEKHMHRGRNRARKSLD 124
                 79***************************************976 PP
2QLQ61.91.8e-211651237
         QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                +FTa+Q+++L++Q+l+yKy+++++PvPpeL++ i++
  AA26G00113 16 PFTATQWEELEHQALIYKYMVSGVPVPPELIFSIRR 51
                9*******************************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.0E-131551IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.0E-151650IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.9921651IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.17481125IPR014977WRC domain
PfamPF088791.6E-2082122IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0030912Biological Processresponse to deep water
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MMSLSGSSGR TMERAPFTAT QWEELEHQAL IYKYMVSGVP VPPELIFSIR RSLDTSLVSR  60
LLPHQSIGWG CYQMGFGRKP DPEPGRCRRT DGKKWRCSRE AYPDSKYCEK HMHRGRNRAR  120
KSLDHQTQTL TSSSSSSSSS TSSASASSSS SMDAYTNTNK FINGGNSRSY FTNHSLHDYP  180
YPKQQQVPLD HVSALSLHHN TSSSTSHFNV LTSQTEHNKD FRYFQGIGER TFFPEASRNF  240
QDSPYQQQHH HHQQPLATVL NDPYNHCTDK VHHTYTSSSS SSHHHRNQEH QQCFVLGADM  300
FNKSSRSILG NTSKSQEDEI EKDSSESKKS LHHFFGEDWS QNKNTSSDSW LDLSSSHSRL  360
NTGS
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Acts together with GIF1 for the development of appropriate leaf size and shape through the promotion and/or maintenance of cell proliferation activity in leaf primordia. {ECO:0000269|PubMed:15326298, ECO:0000269|PubMed:15960617}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA26G00113
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1026381e-113AY102638.1 Arabidopsis thaliana transcription activator (GRF5) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006297825.21e-172growth-regulating factor 5
SwissprotQ8L8A61e-160GRF5_ARATH; Growth-regulating factor 5
TrEMBLR0I2Z11e-170R0I2Z1_9BRAS; Uncharacterized protein
STRINGXP_006297825.11e-171(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45672651
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.11e-137growth-regulating factor 5