PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA26G00106 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | MYB | ||||||||
Protein Properties | Length: 395aa MW: 45485.7 Da PI: 6.9691 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25 | 4.4e-08 | 14 | 39 | 1 | 26 |
TSSS-HHHHHHHHHHHHHTTTT-HHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWkt 26 rg W++eEde+l+++++ +G g+W+t AA26G00106 14 RGLWSPEEDEKLINYINTYGHGCWST 39 788*********************98 PP | |||||||
2 | Myb_DNA-binding | 48.2 | 2.5e-15 | 55 | 97 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 rg+++++E l+++++ lG++ W+ Ia++++ gRt++++k++w+ AA26G00106 55 RGSFSPQEAALIIELHSILGNR-WAQIAKHLP-GRTDNEVKNFWN 97 899*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.68E-23 | 11 | 96 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.4E-5 | 13 | 51 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.9E-6 | 14 | 48 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.7E-14 | 15 | 56 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 25.209 | 50 | 104 | IPR017930 | Myb domain |
SMART | SM00717 | 1.5E-15 | 54 | 102 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.8E-14 | 55 | 98 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.36E-11 | 57 | 97 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.2E-25 | 57 | 104 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009834 | Biological Process | plant-type secondary cell wall biogenesis | ||||
GO:0009901 | Biological Process | anther dehiscence | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 395 aa Download sequence Send to blast |
MGHHSCCNKQ KVKRGLWSPE EDEKLINYIN TYGHGCWSTS CRLRWINYLR PDLKRGSFSP 60 QEAALIIELH SILGNRWAQI AKHLPGRTDN EVKNFWNSSI KKKLMSHHHH LHHGHHHHHH 120 HHNHGHISLL TNLPYHNGFN LINREDNEGS RFFPNLITNT NPNFLTTPQN HIDHHHHNHH 180 NHHNHHNHLS LLSPNVMMTN PLMFSRDQSY NILSTTQIIN NHQQQQSLIS SSNSSHDNNN 240 NNNNDPQWSL PDFPATISTF QDYDDHNNNK LNIVEDQVVY VTSYNDNNSH HQHHHHQHDH 300 DDHESNNELV ATKLLLCGEE VLEGKVLSLS SPNSQDHTNS LLPTYNNGLH QVESYNMNPS 360 MIIIPSSSSS SSQISCGEYV ITPANPSPTQ STWDS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-25 | 14 | 104 | 7 | 108 | B-MYB |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that regulates lignified secondary cell wall thickening of the anther endocethium, which is necessary for anther dehiscence (PubMed:12753590, PubMed:17147638, PubMed:17329564). May play a role in specifying early endothecial cell development by regulating a number of genes linked to secondary thickening such as NST1 and NST2. Acts upstream of the lignin biosynthesis pathway (PubMed:17329564). {ECO:0000269|PubMed:12753590, ECO:0000269|PubMed:17147638, ECO:0000269|PubMed:17329564}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA26G00106 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by auxin. {ECO:0000269|PubMed:23410518}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF175997 | 1e-61 | AF175997.1 Arabidopsis thaliana putative transcription factor (MYB26) mRNA, complete cds. | |||
GenBank | AY519588 | 1e-61 | AY519588.1 Arabidopsis thaliana MYB transcription factor (At3g13890) mRNA, complete cds. | |||
GenBank | DQ446661 | 1e-61 | DQ446661.1 Arabidopsis thaliana clone pENTR221-At3g13890 myb family transcription factor (At3g13890) mRNA, complete cds. | |||
GenBank | DQ653083 | 1e-61 | DQ653083.1 Arabidopsis thaliana clone 0000019124_0000013170 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006299589.1 | 1e-113 | transcription factor MYB26 | ||||
Swissprot | Q9SPG3 | 1e-107 | MYB26_ARATH; Transcription factor MYB26 | ||||
TrEMBL | A0A087H9E6 | 1e-118 | A0A087H9E6_ARAAL; Uncharacterized protein | ||||
STRING | A0A087H9E6 | 1e-119 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12803 | 19 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13890.2 | 5e-99 | myb domain protein 26 |
Publications ? help Back to Top | |||
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